Detailed information NTG0346541

Bioinformatically predicted

Overview

• Name: ysxA/radC
• Type: Machinery gene
• Locus tag: GII88_RS15490
• Genome accession: NZ_CP045814
• Coordinates: 2944604..2945278 (-)
• Length: 224 a.a.
• NCBI ID: WP_003184045.1
• Uniprot ID: Q65GL3
• Organism: Bacillus licheniformis strain P8_B2
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2939604..2950278

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GII88_RS15455 (GII88_15455)	-	2939715..2940143 (+)	429	WP_003184032.1	SRPBCC domain-containing protein	-
GII88_RS15460 (GII88_15460)	-	2940143..2940463 (+)	321	WP_003184034.1	metalloregulator ArsR/SmtB family transcription factor	-
GII88_RS15465 (GII88_15465)	minD	2940508..2941314 (-)	807	WP_003184035.1	septum site-determining protein MinD	-
GII88_RS15470 (GII88_15470)	minC	2941317..2941997 (-)	681	WP_011198163.1	septum site-determining protein MinC	-
GII88_RS15475 (GII88_15475)	mreD	2942052..2942570 (-)	519	WP_003184039.1	rod shape-determining protein MreD	-
GII88_RS15480 (GII88_15480)	mreC	2942567..2943475 (-)	909	WP_003184040.1	rod shape-determining protein MreC	-
GII88_RS15485 (GII88_15485)	-	2943506..2944516 (-)	1011	WP_003184042.1	rod shape-determining protein	-
GII88_RS15490 (GII88_15490)	ysxA/radC	2944604..2945278 (-)	675	WP_003184045.1	DNA repair protein RadC	Machinery gene
GII88_RS15495 (GII88_15495)	-	2945333..2945905 (-)	573	WP_003184048.1	Maf family protein	-
GII88_RS15500 (GII88_15500)	-	2946059..2947090 (-)	1032	WP_003184050.1	SPOR domain-containing protein	-
GII88_RS15505 (GII88_15505)	comC	2947294..2948073 (-)	780	WP_016886351.1	A24 family peptidase	Machinery gene
GII88_RS15510 (GII88_15510)	-	2948186..2949484 (-)	1299	WP_026080808.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-

Sequence

Protein

• Length: 224 a.a.
• Molecular weight: 25239.11 Da
• Isoelectric Point: 8.3107

>NTDB_id=346541 GII88_RS15490 WP_003184045.1 2944604..2945278(-) (ysxA/radC) [Bacillus licheniformis strain P8_B2]
MKLKDFPDEERPRERLLNTGAESLSNHELLAILLRTGTKKESVLQLSSRLLQTFDGLRLLKEASAEELSSISGIGRAKAV
QILAALELGRRIHSLACKDRYVIRFPEDAANFLMGDMRFLSQEHFVCVYLNTKNQVIHKRTVFIGSLNSSIVHPREVFKE
ALKRSAASFICVHNHPSGDPAPSREDIEVTQRLHESGQLLGIELLDHIIIGDQKFVSLKEKGYL

Nucleotide

• Length: 675 bp

>NTDB_id=346541 GII88_RS15490 WP_003184045.1 2944604..2945278(-) (ysxA/radC) [Bacillus licheniformis strain P8_B2]
TTGAAATTAAAAGATTTTCCTGATGAAGAAAGGCCAAGGGAGCGCCTTCTCAACACAGGCGCCGAAAGTTTGTCAAACCA
TGAACTGCTTGCGATACTGCTCAGAACCGGTACGAAAAAAGAATCGGTTCTTCAGCTTTCAAGCCGGCTGCTTCAAACGT
TTGACGGCCTCCGTTTGTTAAAAGAAGCATCCGCCGAGGAGCTTTCAAGCATTTCCGGGATCGGCCGCGCAAAAGCCGTG
CAGATTTTGGCGGCCCTTGAGCTTGGCCGGCGCATTCACAGTCTGGCTTGCAAAGACCGTTATGTGATTCGTTTTCCCGA
AGATGCGGCCAATTTTTTAATGGGGGATATGCGCTTTCTCTCTCAGGAGCACTTCGTATGTGTGTATCTGAACACGAAAA
ACCAGGTGATCCACAAGCGCACGGTTTTTATAGGGAGCCTGAACTCTTCAATCGTCCATCCGAGGGAAGTGTTTAAAGAA
GCTTTAAAGCGCTCCGCAGCTTCATTCATCTGCGTCCACAATCATCCGTCCGGAGATCCGGCTCCAAGCCGCGAAGACAT
AGAAGTTACACAGCGCCTTCACGAGTCCGGACAGCTGCTCGGAATCGAATTGCTCGATCATATCATCATCGGTGATCAAA
AATTTGTGAGCTTAAAAGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

• UPF0758 N-terminal (UPF0758_N) (4-80)

• RadC-like JAB domain (RadC) (104-222)

3D structure

• AlphaFold DB: Q65GL3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	80.804	100	0.808
radC	Streptococcus pneumoniae TIGR4	46.667	93.75	0.438
radC	Streptococcus pneumoniae R6	46.19	93.75	0.433
radC	Streptococcus pneumoniae D39	46.19	93.75	0.433
radC	Streptococcus gordonii str. Challis substr. CH1	44.762	93.75	0.42