Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   GII88_RS15505 Genome accession   NZ_CP045814
Coordinates   2947294..2948073 (-) Length   259 a.a.
NCBI ID   WP_016886351.1    Uniprot ID   -
Organism   Bacillus licheniformis strain P8_B2     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2942294..2953073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII88_RS15480 (GII88_15480) mreC 2942567..2943475 (-) 909 WP_003184040.1 rod shape-determining protein MreC -
  GII88_RS15485 (GII88_15485) - 2943506..2944516 (-) 1011 WP_003184042.1 rod shape-determining protein -
  GII88_RS15490 (GII88_15490) ysxA/radC 2944604..2945278 (-) 675 WP_003184045.1 DNA repair protein RadC Machinery gene
  GII88_RS15495 (GII88_15495) - 2945333..2945905 (-) 573 WP_003184048.1 Maf family protein -
  GII88_RS15500 (GII88_15500) - 2946059..2947090 (-) 1032 WP_003184050.1 SPOR domain-containing protein -
  GII88_RS15505 (GII88_15505) comC 2947294..2948073 (-) 780 WP_016886351.1 A24 family peptidase Machinery gene
  GII88_RS15510 (GII88_15510) - 2948186..2949484 (-) 1299 WP_026080808.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  GII88_RS15515 (GII88_15515) - 2949566..2952208 (-) 2643 WP_003184055.1 valine--tRNA ligase -
  GII88_RS15520 (GII88_15520) - 2952664..2952855 (+) 192 WP_003184058.1 hypothetical protein -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28117.93 Da        Isoelectric Point: 8.9928

>NTDB_id=346542 GII88_RS15505 WP_016886351.1 2947294..2948073(-) (comC) [Bacillus licheniformis strain P8_B2]
MKFDSARLITMFIFYLFTAGLVLGSFFNSAGRRIPEKISLIAPRSLCRVCKRQLGFSELIPVLSYLMQRGRCKGCQTPLS
IVYPAVELSAAILFAFAGMHVGHEGELVIVLALISLLLIVFVSDVTHMIIPDAVLCFFLPVFAVGRFLVPLEQWHSSLSG
AMAGGMLPLLTLLLTKGGIGWGDVKLFAVIGMALGSRLLVLAFFLSAAAGTVLGLIALLAGKLKKNEPMPFAPAILAGTL
TSCFYGEPMIEWYLQTAWW

Nucleotide


Download         Length: 780 bp        

>NTDB_id=346542 GII88_RS15505 WP_016886351.1 2947294..2948073(-) (comC) [Bacillus licheniformis strain P8_B2]
ATGAAATTTGATTCTGCGAGGTTGATAACGATGTTCATCTTTTACCTTTTTACGGCAGGTTTAGTGCTCGGCTCTTTTTT
TAATTCGGCCGGGCGCCGCATTCCTGAAAAGATATCATTGATTGCTCCGCGTTCCCTCTGCCGCGTCTGCAAAAGGCAGC
TGGGCTTCTCGGAGCTGATACCGGTTTTGTCCTATTTGATGCAGCGGGGGAGGTGCAAAGGATGTCAAACCCCGCTCTCG
ATCGTGTATCCGGCAGTTGAGCTCTCCGCCGCCATCCTGTTTGCGTTTGCCGGCATGCACGTTGGGCATGAGGGGGAGCT
GGTGATTGTGCTTGCTCTTATATCTCTGCTTTTGATCGTCTTTGTATCTGATGTGACACACATGATCATTCCGGATGCTG
TTCTTTGTTTTTTCCTGCCTGTCTTTGCCGTCGGACGATTCCTTGTTCCTCTGGAACAGTGGCACTCAAGTTTGAGCGGT
GCGATGGCCGGCGGTATGCTGCCCCTCTTGACGCTGCTTTTGACGAAAGGGGGGATCGGCTGGGGAGACGTAAAGCTGTT
TGCGGTAATCGGCATGGCGCTCGGCAGCCGCCTCCTCGTTCTCGCTTTTTTCCTCTCGGCAGCCGCAGGAACGGTGCTTG
GTCTTATTGCACTCCTGGCAGGCAAACTGAAGAAAAATGAACCAATGCCGTTTGCTCCCGCGATTCTGGCCGGGACGCTG
ACGAGCTGCTTCTATGGCGAACCAATGATCGAGTGGTACCTTCAAACGGCATGGTGGTGA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(19-100)

Type IV leader peptidase family (Peptidase_A24)

(112-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

48.347

93.436

0.452

Multiple sequence alignment