Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   EXW31_RS20245 Genome accession   NZ_CP035974
Coordinates   3886500..3888239 (-) Length   579 a.a.
NCBI ID   WP_016106127.1    Uniprot ID   A0A1G4EQA9
Organism   Bacillus mycoides strain BPN102     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3881500..3893239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW31_RS20215 (EXW31_20565) - 3881830..3882063 (+) 234 WP_002111735.1 DUF2627 domain-containing protein -
  EXW31_RS20220 (EXW31_20570) - 3882106..3882840 (-) 735 WP_002111737.1 glycerophosphodiester phosphodiesterase -
  EXW31_RS20225 (EXW31_20575) - 3882891..3883037 (+) 147 WP_001247671.1 YycC family protein -
  EXW31_RS20230 (EXW31_20580) - 3883186..3883758 (-) 573 WP_215572031.1 PRK06770 family protein -
  EXW31_RS20235 (EXW31_20585) spo0A 3884008..3884802 (-) 795 WP_016100158.1 sporulation transcription factor Spo0A Regulator
  EXW31_RS20240 (EXW31_20595) spoIVB 3885089..3886381 (-) 1293 WP_033711018.1 SpoIVB peptidase -
  EXW31_RS20245 (EXW31_20600) recN 3886500..3888239 (-) 1740 WP_016106127.1 DNA repair protein RecN Machinery gene
  EXW31_RS20250 (EXW31_20605) argR 3888510..3888959 (-) 450 WP_002015076.1 arginine repressor ArgR -
  EXW31_RS20255 (EXW31_20610) - 3889102..3889941 (-) 840 WP_215572032.1 TlyA family RNA methyltransferase -
  EXW31_RS20260 (EXW31_20615) dxs 3889945..3891837 (-) 1893 WP_078172837.1 1-deoxy-D-xylulose-5-phosphate synthase -
  EXW31_RS20265 (EXW31_20620) ispA 3892146..3893039 (-) 894 WP_078180988.1 (2E,6E)-farnesyl diphosphate synthase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65637.94 Da        Isoelectric Point: 5.2162

>NTDB_id=345424 EXW31_RS20245 WP_016106127.1 3886500..3888239(-) (recN) [Bacillus mycoides strain BPN102]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDAKHPCIAK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSILKEIGKTLVDIHGQHETQDLMNEERHMFMLDHFDGNRIVKQL
AIYQNVYTDYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKMDEEYELTEERLKISNFEKIYKALGDAYRSLSG
DGQGLDHVRNAMGQMESITHLDEAYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPKRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTRKQLTKLEGVIVKEATLLSTMRHELADHLTSAIHQELKELYMEKTKFEVRIM
KRVGNVEEPLVEGTPVKLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLSTDEKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=345424 EXW31_RS20245 WP_016106127.1 3886500..3888239(-) (recN) [Bacillus mycoides strain BPN102]
TTGTTATCGGAATTATCGATCAGAAACTTTGCTATTATTGAGGCATTAAATATTTCTTTTCAAAAAGGTTTAACCGTTTT
AAGTGGTGAAACAGGAGCTGGAAAATCCATTATTATTGATGCAATTAGTTTGCTTGTTGGTGGCCGTGGTTCAGCAGAAT
TTGTTCGATATGGAACAGAAAAGGCTGAGATAGAAGGATTATTCTATGTAGAAGATGCCAAGCATCCATGTATCGCAAAG
GCAGAAGAGTTAGATATAGAAATAGAAGATGGCATGATTATTTTGAAGCGTGACATCGCTGCTAACGGAAAAAGTGTCTG
TCGTGTAAATGGGAAACTTGTTACACTCAGCATATTAAAAGAGATTGGAAAAACGCTAGTTGATATTCATGGACAGCATG
AAACACAAGATTTAATGAATGAAGAGCGTCATATGTTTATGCTTGATCATTTTGATGGAAATCGCATTGTTAAACAATTG
GCCATATATCAAAATGTATATACAGACTATGAGAAGTTAAAAAAACAGCTAAAATCTTTAAGTGAAAATGAACAACAAAT
GGCCCATCGTCTAGATTTAATTCAATTCCAACATGAAGAAATTCGTAAGGCGGATTTAAAAATGGATGAAGAATATGAAT
TGACTGAGGAACGATTAAAAATCTCCAATTTTGAAAAGATTTATAAAGCATTAGGAGATGCGTATCGTTCGTTAAGTGGA
GACGGACAGGGGTTAGATCACGTAAGAAATGCAATGGGACAAATGGAGAGTATTACGCACTTAGATGAAGCGTATCAAGA
AAATCATGATTCCATTGCAAATAGCTATTACTTATTAGAAGAAGTTGCATATCAGCTTAGAGAAAAGTTAGATATGATGG
AATATGATCCGAAACGTCTAGATGAAATTGAAACACGGTTGAATGAAATCCGTATGTTAAAGAGAAAGTATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATTGAACAAGAAATTTTTACGATTGAAAATAAAGACGTACATATTGAAAC
GACGAGAAAGCAGTTAACGAAATTAGAAGGTGTTATTGTAAAAGAAGCAACGTTGTTAAGTACTATGCGTCATGAGCTTG
CGGATCATCTTACAAGCGCTATTCATCAAGAATTAAAAGAACTATATATGGAAAAAACGAAATTTGAAGTGAGAATTATG
AAGAGGGTAGGAAATGTAGAAGAACCTCTCGTGGAAGGAACACCGGTAAAACTTACGGCGGATGGCTACGATCATGTGGA
ATTTTATATTTCAACGAATCCGGGTGAACCGTTAAAGCCACTTTCAAAGGTCGCTTCTGGCGGAGAGTTATCTCGTATTA
TTTTAGCTTTAAAAAGCATTTTTTCTAAGCATCAAGGTGTTGCATCTGTTATTTTTGATGAAGTGGATACGGGTGTGAGT
GGTCGGGTTGCGCAGGCTATTGCGGAAAAAATTTATCGTGTATCAGTAAACTCGCAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCGGACTCGCATTTATTTATTAGAAAACAAGTGGCGAATGATCGGACGATTACATCGGTTACTG
TGTTAAGTACGGATGAAAAAGTAACAGAAATTGCTCGAATGATTTCTGGTGTTGAAATTACAGATTTAACGACAGAGCAT
GCGAAAGAGTTACTTACGCAAGCGCATCATTTCAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1G4EQA9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.931

100

0.599

Multiple sequence alignment