Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   GHB96_RS10665 Genome accession   NZ_CP045707
Coordinates   2052734..2052877 (-) Length   47 a.a.
NCBI ID   WP_047925941.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NG250     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2047734..2057877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GHB96_RS10640 (GHB96_11215) pilA 2048945..2050198 (+) 1254 WP_047921365.1 signal recognition particle-docking protein FtsY Machinery gene
  GHB96_RS10645 - 2050313..2050453 (-) 141 WP_172763037.1 hypothetical protein -
  GHB96_RS10650 (GHB96_11220) - 2050467..2051308 (-) 842 Protein_2076 opacity family porin -
  GHB96_RS12030 (GHB96_11225) - 2051851..2052365 (-) 515 Protein_2077 pilin -
  GHB96_RS10665 (GHB96_11230) pilE 2052734..2052877 (-) 144 WP_047925941.1 hypothetical protein Machinery gene
  GHB96_RS12035 - 2053180..2053298 (-) 119 Protein_2079 pilin -
  GHB96_RS10670 (GHB96_11235) - 2053421..2053818 (-) 398 Protein_2080 pilin -
  GHB96_RS10675 (GHB96_11245) lpxC 2053946..2054869 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  GHB96_RS10685 (GHB96_11250) pilE 2055583..2056002 (-) 420 WP_215772523.1 pilin Machinery gene
  GHB96_RS10690 (GHB96_11255) - 2056098..2056529 (-) 432 Protein_2083 pilin -
  GHB96_RS10695 (GHB96_11260) - 2057056..2057409 (-) 354 Protein_2084 pilin -
  GHB96_RS10700 (GHB96_11265) pilE 2057348..2057665 (-) 318 WP_003697861.1 pilin Machinery gene

Sequence

Protein


Download         Length: 47 a.a.        Molecular weight: 5035.49 Da        Isoelectric Point: 6.1878

>NTDB_id=345422 GHB96_RS10665 WP_047925941.1 2052734..2052877(-) (pilE) [Neisseria gonorrhoeae strain NG250]
MTGFNDAAGNDKIDTKHLPSTCRDESSAVCTKHHAPISNAFQENGAF

Nucleotide


Download         Length: 144 bp        

>NTDB_id=345422 GHB96_RS10665 WP_047925941.1 2052734..2052877(-) (pilE) [Neisseria gonorrhoeae strain NG250]
ATGACGGGATTTAATGATGCCGCCGGCAACGACAAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGATGAATCATC
TGCCGTTTGCACGAAACACCACGCGCCGATTTCAAATGCTTTCCAAGAAAACGGAGCTTTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

73.333

63.83

0.468

Multiple sequence alignment