Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   EXW31_RS20235 Genome accession   NZ_CP035974
Coordinates   3884008..3884802 (-) Length   264 a.a.
NCBI ID   WP_016100158.1    Uniprot ID   A0A1G4EVS3
Organism   Bacillus mycoides strain BPN102     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 3879008..3889802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW31_RS20210 (EXW31_20560) - 3879620..3881692 (-) 2073 WP_088079349.1 sigma-54 interaction domain-containing protein -
  EXW31_RS20215 (EXW31_20565) - 3881830..3882063 (+) 234 WP_002111735.1 DUF2627 domain-containing protein -
  EXW31_RS20220 (EXW31_20570) - 3882106..3882840 (-) 735 WP_002111737.1 glycerophosphodiester phosphodiesterase -
  EXW31_RS20225 (EXW31_20575) - 3882891..3883037 (+) 147 WP_001247671.1 YycC family protein -
  EXW31_RS20230 (EXW31_20580) - 3883186..3883758 (-) 573 WP_215572031.1 PRK06770 family protein -
  EXW31_RS20235 (EXW31_20585) spo0A 3884008..3884802 (-) 795 WP_016100158.1 sporulation transcription factor Spo0A Regulator
  EXW31_RS20240 (EXW31_20595) spoIVB 3885089..3886381 (-) 1293 WP_033711018.1 SpoIVB peptidase -
  EXW31_RS20245 (EXW31_20600) recN 3886500..3888239 (-) 1740 WP_016106127.1 DNA repair protein RecN Machinery gene
  EXW31_RS20250 (EXW31_20605) argR 3888510..3888959 (-) 450 WP_002015076.1 arginine repressor ArgR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29595.37 Da        Isoelectric Point: 7.1180

>NTDB_id=345423 EXW31_RS20235 WP_016100158.1 3884008..3884802(-) (spo0A) [Bacillus mycoides strain BPN102]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGIAYNGQECLNLLKEKQPDILVLDIIMPHLDGLAVLEKMRHIERLRQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKENSTIKRPLPSFRSATTIDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=345423 EXW31_RS20235 WP_016100158.1 3884008..3884802(-) (spo0A) [Bacillus mycoides strain BPN102]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAATTGGTATCGATGCTAGAGAGCTATGTTGCTGCTCAGGA
TGATATGGAAGTTATTGGAATTGCTTACAATGGTCAAGAATGTTTAAACTTATTGAAAGAAAAGCAGCCTGATATACTCG
TTTTAGACATTATTATGCCACATTTAGATGGTCTAGCTGTGCTAGAGAAAATGCGACATATTGAAAGGTTAAGACAACCT
AACGTTATTATGTTGACAGCATTCGGACAAGAAGATGTGACGAAAAAAGCGGTTGATTTAGGGGCATCATATTTCATATT
AAAACCATTTGATATGGAGAATTTAACAAGTCATATTCGTCAAGTTAGTGGTAAGGAAAATTCCACCATTAAACGTCCAT
TACCATCTTTCCGATCAGCAACAACGATTGATGGCAAACCGAAAAACTTAGATGCGAGTATTACAAGTATCATTCATGAA
ATTGGTGTACCCGCTCATATTAAAGGATATATGTACTTACGAGAAGCAATCTCTATGGTGTACAATGATATCGAATTACT
AGGATCTATTACGAAAGTATTATATCCAGATATCGCAAAGAAATATAATACAACAGCAAGTCGTGTCGAGCGCGCAATCC
GTCACGCAATTGAAGTAGCTTGGAGCCGTGGGAATATTGATTCTATTTCGTCCTTATTTGGTTATACTGTATCGATGTCA
AAAGCAAAACCTACGAATTCCGAGTTCATCGCAATGGTTGCGGATAAGCTAAGACTTGAACATAAGGCTAGCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1G4EVS3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

81.273

100

0.822

Multiple sequence alignment