Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PC1_RS20120 Genome accession   NC_012917
Coordinates   4555292..4556818 (+) Length   508 a.a.
NCBI ID   WP_015842126.1    Uniprot ID   C6DHH5
Organism   Pectobacterium carotovorum subsp. carotovorum PC1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4550292..4561818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PC1_RS20105 (PC1_4030) - 4551728..4552654 (-) 927 WP_015842124.1 branched-chain amino acid transaminase -
  PC1_RS20110 (PC1_4031) ilvM 4552681..4552941 (-) 261 WP_010294673.1 acetolactate synthase 2 small subunit -
  PC1_RS20115 (PC1_4032) ilvG 4552999..4554645 (-) 1647 WP_015842125.1 acetolactate synthase 2 catalytic subunit -
  PC1_RS22095 ilvL 4554786..4554884 (-) 99 WP_071531109.1 ilv operon leader peptide -
  PC1_RS20120 (PC1_4033) comM 4555292..4556818 (+) 1527 WP_015842126.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PC1_RS20125 (PC1_4034) - 4556875..4557213 (-) 339 WP_014701822.1 DUF413 domain-containing protein -
  PC1_RS20130 (PC1_4035) hdfR 4557334..4558161 (+) 828 WP_015842127.1 HTH-type transcriptional regulator HdfR -
  PC1_RS20135 (PC1_4036) yjfF 4558183..4559145 (-) 963 WP_015842128.1 galactofuranose ABC transporter, permease protein YjfF -
  PC1_RS20140 (PC1_4037) ytfT 4559145..4560155 (-) 1011 WP_015842129.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  PC1_RS20145 (PC1_4038) ytfR 4560142..4561662 (-) 1521 WP_015842130.1 galactofuranose ABC transporter, ATP-binding protein YtfR -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55425.94 Da        Isoelectric Point: 6.6928

>NTDB_id=34535 PC1_RS20120 WP_015842126.1 4555292..4556818(+) (comM) [Pectobacterium carotovorum subsp. carotovorum PC1]
MSLAVTYTRAMIGVQAPDVYIEVHISSGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIDGEKLSRYEFLGELGLSGTLRGVNGAIPAALEAIKSGRQLILPDDNKREMTLIPQGEALMAGHL
LEVCAFLSGEEELLSCSDIALAPQSEEDALDLKDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLGNLMPPLS
DEEALESAAINSLINIDATMTRWRARPFRAPHHSSSMAALVGGGSLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIIISRTRAKVCYPARVQLVAAMNPSPSGHYQGIHNRLPAQQILRYLSKLSGPFLDRFDLSIEVPLLPPGVLSQQRH
QGESSATIRERVLIARQIQLKRANKINALLTSREIEQHCALEAPDAAYLEEVMNKLGLSVRAWHRILKVARTIADLGDRN
NIERKHIAEALSYRSMDRLLIQLHRSLE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=34535 PC1_RS20120 WP_015842126.1 4555292..4556818(+) (comM) [Pectobacterium carotovorum subsp. carotovorum PC1]
ATGTCATTGGCAGTTACCTATACTCGGGCAATGATTGGCGTACAAGCGCCGGACGTTTATATCGAAGTTCACATCAGCAG
TGGGCTACCGGCCTTAACGCTAGTTGGCTTACCAGAAACTACCGTTAAGGAAGCGCGAGATCGCGTGCGCAGCGCACTCA
TCAATTGCGGATTTACCTTTCCAGCCAAGCGCATCACGGTCAACCTTGCTCCCGCAGACCTGCCAAAAGAAGGGGGACGC
TACGACCTGCCGATTGCTCTGGCGATTCTGGCGGCATCAGAACAAATCGATGGGGAAAAGCTAAGCCGCTACGAGTTTCT
TGGCGAACTCGGCCTGTCTGGCACGCTACGTGGCGTCAATGGCGCAATTCCCGCCGCACTGGAAGCCATAAAATCCGGCC
GCCAGCTAATCCTGCCAGATGACAATAAACGGGAGATGACGCTGATACCGCAAGGTGAAGCGTTAATGGCTGGGCATTTG
TTGGAAGTGTGTGCTTTTCTCAGCGGGGAAGAGGAGCTACTCAGTTGCTCCGATATCGCACTGGCTCCGCAGTCAGAAGA
AGATGCACTCGACCTGAAGGATATCATCGGTCAGGAGCAGGCTAAACGCGCGTTGGAAATCGCGGCGGCTGGCGGTCACA
ATCTGCTATTGCTGGGGCCGCCGGGAACAGGGAAAACCATGCTGGCGAGCCGATTAGGCAATCTGATGCCGCCATTAAGC
GATGAAGAAGCGCTGGAAAGCGCCGCCATCAACAGCCTCATCAACATTGATGCCACCATGACGCGCTGGCGTGCCAGACC
GTTCAGAGCGCCTCACCACAGTTCTTCTATGGCCGCGCTCGTGGGGGGAGGATCGTTGCCAAAACCTGGAGAAATCTCAC
TTGCTCACAACGGCGTGCTGTTTCTGGATGAATTACCGGAGTTTGAGCGACGCGTTCTGGATTCTCTACGAGAGCCTCTG
GAGTCCGGTGAAATTATCATTTCCCGGACGCGCGCCAAAGTGTGCTACCCGGCACGCGTGCAGCTCGTCGCTGCAATGAA
TCCCAGCCCATCAGGCCACTATCAAGGCATCCATAACCGCTTACCCGCACAACAAATACTGCGCTATCTCAGCAAACTTT
CCGGGCCCTTTTTGGATCGCTTTGACCTTTCGATCGAAGTTCCTTTGCTACCACCAGGGGTTTTATCTCAGCAACGTCAT
CAGGGGGAAAGCAGCGCAACAATTCGCGAGCGCGTGCTAATCGCACGGCAGATACAGCTGAAGCGGGCAAATAAAATCAA
CGCGCTGCTCACCTCACGCGAAATAGAACAACACTGTGCGTTAGAGGCGCCTGATGCGGCTTATCTGGAAGAAGTGATGA
ACAAACTCGGCTTATCCGTACGCGCCTGGCACAGGATATTGAAAGTCGCACGCACGATCGCTGACCTCGGCGATCGGAAC
AACATAGAGAGAAAGCATATTGCCGAAGCACTGAGCTATCGCAGTATGGATCGATTGCTCATCCAGCTCCACAGAAGTCT
TGAATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C6DHH5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

63.834

99.606

0.636
  comM Vibrio cholerae strain A1552

63.817

99.016

0.632
  comM Glaesserella parasuis strain SC1401

63.116

99.803

0.63
  comM Vibrio campbellii strain DS40M4

62.648

99.606

0.624
  comM Legionella pneumophila str. Paris

50.299

98.622

0.496
  comM Legionella pneumophila strain ERS1305867

50.299

98.622

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.535

99.803

0.474

Multiple sequence alignment