Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   EXN22_RS19880 Genome accession   NZ_CP035952
Coordinates   4352898..4355120 (-) Length   740 a.a.
NCBI ID   WP_130265670.1    Uniprot ID   A0A411MM08
Organism   Pseudomonas tructae strain SNU WT1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4347898..4360120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXN22_RS19845 (EXN22_19845) murB 4348289..4349308 (-) 1020 WP_130265664.1 UDP-N-acetylmuramate dehydrogenase -
  EXN22_RS19850 (EXN22_19850) - 4349305..4349769 (-) 465 WP_130265665.1 low molecular weight protein-tyrosine-phosphatase -
  EXN22_RS19855 (EXN22_19855) kdsB 4349769..4350533 (-) 765 WP_130265666.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  EXN22_RS19860 (EXN22_19860) - 4350530..4350715 (-) 186 WP_038994143.1 Trm112 family protein -
  EXN22_RS19865 (EXN22_19865) lpxK 4350754..4351764 (-) 1011 WP_130265667.1 tetraacyldisaccharide 4'-kinase -
  EXN22_RS19870 (EXN22_19870) - 4351764..4352195 (-) 432 WP_130265668.1 biopolymer transporter ExbD -
  EXN22_RS19875 (EXN22_19875) exbB 4352192..4352827 (-) 636 WP_130265669.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  EXN22_RS19880 (EXN22_19880) comA 4352898..4355120 (-) 2223 WP_130265670.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  EXN22_RS19885 (EXN22_19885) - 4355264..4355806 (+) 543 WP_130265671.1 DUF2062 domain-containing protein -
  EXN22_RS19890 (EXN22_19890) - 4355774..4356553 (-) 780 WP_130265672.1 ABC transporter permease -
  EXN22_RS19895 (EXN22_19895) - 4356550..4357482 (-) 933 WP_130265673.1 ABC transporter ATP-binding protein -
  EXN22_RS19900 (EXN22_19900) - 4357623..4358246 (-) 624 WP_130265674.1 glutathione S-transferase family protein -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 80972.16 Da        Isoelectric Point: 10.3600

>NTDB_id=345243 EXN22_RS19880 WP_130265670.1 4352898..4355120(-) (comA) [Pseudomonas tructae strain SNU WT1]
MRTGMLALALGLLSLGLLPALPSVWTLVLLIAFGICCLAAKLWSIGLFLLGLSWACVSAQLALDERLAAPLDGRTLWIEG
RITGLPEQGTRSVRFELSDAQSRRGPLPRRMQLSWFGGPVVNSGEYWRLAVSLKRPSGLLNPHGPDQEASLLARRVGATG
SVKAGERLLPATAAWRNDLRQRLLAVDAQGREAALVALIIGDGGGLARQDWQALQATGTVHLLVISGQHIGLLAGLVYAL
IAGLARLGWWPQRLPWLPWACVLAFAAALAYGVLAGFQVPVQRACMMLAMVLLWRLRFRHLGVGLPLLLALNAVLLWEPL
ASLQPGLWLSFMAVAVLIFIFSGRLGAWNPWLAWSRAQWLIAIGLLPVLLAQGLPVSLTAPLINLLAVPWISLAVLPAAL
LGTLLLPVPYVGEGLLWLAGGLLDGLFRLLVEVAAWQPAWLPEPLPFWAWLLVCLGAWLLLLPHGLPMRLLGWPLLLLAV
FTPRERVPLGQAEVWQLDVGQGLAFVLRTRHHAMLYDAGPAMGDFDLGERVVLPSLRKLGVRRLDLMLLSHADADHAGGA
RAVQRGLPVLRVLGGEAAALPEALKAQPCNSGERWQWDGVNFSLWQWRDASDSNQDSCVLLVEARGEKLLLTGDLDARGE
RAWTRDWQASRVDWLQSPHHGSRSSSSEALLKATAPRGVLISRGRYNAFGHPHPQVLARYRTHGIQAYDSVEYGALRLRL
GSFGEPEGLRAQRRFWRDPR

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=345243 EXN22_RS19880 WP_130265670.1 4352898..4355120(-) (comA) [Pseudomonas tructae strain SNU WT1]
ATGCGCACAGGGATGTTGGCGCTTGCGCTCGGGCTGCTCAGCCTCGGGTTGCTACCGGCTTTACCGTCCGTCTGGACACT
TGTCCTGCTGATCGCTTTCGGGATTTGCTGCCTGGCTGCCAAGCTATGGTCGATTGGACTTTTTCTGCTGGGATTGAGCT
GGGCCTGCGTCTCGGCGCAATTGGCGCTGGATGAGCGCCTGGCCGCGCCGCTCGATGGCCGTACTCTATGGATAGAAGGC
CGGATCACCGGTTTGCCGGAGCAAGGCACGCGCTCCGTGAGATTCGAGTTGAGCGATGCCCAGTCGCGCCGCGGACCATT
GCCAAGGCGCATGCAGCTCAGCTGGTTCGGTGGCCCAGTTGTCAACAGCGGTGAATATTGGCGATTGGCCGTCAGCCTCA
AGCGACCCTCCGGCTTGCTCAATCCTCACGGCCCGGATCAGGAGGCCAGTCTGTTGGCCCGGCGCGTCGGCGCCACCGGC
AGCGTCAAGGCTGGCGAGCGCCTCCTGCCAGCAACAGCGGCCTGGCGCAATGACCTGCGCCAGCGCTTGCTGGCCGTCGA
TGCCCAGGGCCGGGAGGCGGCGCTGGTGGCGTTGATTATCGGTGATGGCGGCGGGCTCGCACGGCAAGACTGGCAAGCCC
TGCAAGCCACCGGCACGGTGCACCTGCTGGTGATTTCAGGCCAGCATATAGGCCTGCTGGCCGGGTTGGTGTACGCCTTG
ATTGCCGGGCTGGCGCGCCTGGGCTGGTGGCCGCAGCGGCTGCCCTGGTTGCCTTGGGCCTGTGTGCTGGCATTCGCCGC
AGCCCTGGCCTATGGCGTGCTGGCCGGGTTTCAGGTGCCGGTGCAGCGGGCCTGCATGATGCTGGCCATGGTGCTGCTCT
GGCGTCTGCGTTTTCGTCACCTGGGCGTTGGCTTGCCGCTGTTGCTGGCGCTCAACGCAGTGCTGCTATGGGAGCCGCTG
GCCAGCTTGCAGCCAGGCTTGTGGCTGTCATTCATGGCCGTTGCAGTGCTGATTTTCATCTTCAGCGGCCGCCTGGGCGC
CTGGAATCCCTGGCTGGCCTGGAGCCGCGCCCAATGGTTGATCGCCATCGGCTTGTTGCCAGTGTTGCTGGCGCAAGGTC
TGCCAGTGAGCCTGACAGCGCCGCTGATCAACCTGCTGGCCGTACCGTGGATCAGTCTTGCGGTATTGCCGGCGGCGCTG
CTGGGTACCCTGTTGCTGCCTGTGCCCTATGTGGGCGAAGGGCTGTTATGGCTGGCGGGCGGATTGCTGGACGGCTTGTT
TCGCCTGCTGGTTGAAGTCGCGGCCTGGCAGCCGGCCTGGCTGCCCGAGCCGCTGCCGTTCTGGGCCTGGTTGCTGGTAT
GCCTGGGGGCTTGGCTGCTGCTGTTGCCACACGGCCTGCCCATGCGCCTGCTCGGTTGGCCGTTGTTACTGCTGGCTGTG
TTTACGCCCAGAGAACGCGTGCCCCTGGGTCAAGCCGAAGTCTGGCAGCTGGATGTCGGCCAGGGGCTGGCATTTGTCCT
GCGTACGCGTCACCACGCCATGCTCTACGATGCCGGGCCCGCCATGGGCGATTTCGATCTGGGGGAGCGGGTGGTGTTGC
CCAGCTTGCGCAAGCTGGGTGTGCGCAGGCTGGACTTGATGCTGCTCAGCCATGCCGATGCCGACCACGCCGGTGGTGCC
CGCGCTGTGCAGCGTGGCTTGCCGGTGTTGCGGGTGCTCGGTGGTGAAGCGGCGGCATTGCCTGAAGCGCTCAAGGCGCA
GCCCTGCAACAGCGGCGAACGGTGGCAGTGGGACGGGGTGAATTTTTCCCTTTGGCAATGGCGTGACGCCAGCGACAGCA
ACCAGGACTCCTGTGTGCTGTTGGTCGAGGCTCGAGGTGAAAAGCTGCTGCTCACCGGCGATCTCGATGCCCGTGGTGAA
CGGGCCTGGACGCGCGACTGGCAGGCGAGCCGGGTCGATTGGCTACAGTCCCCGCATCACGGCAGTCGCAGTTCCTCCAG
CGAGGCATTGCTCAAGGCCACCGCTCCGCGCGGCGTGCTGATTTCACGTGGGCGCTACAACGCCTTCGGTCATCCCCATC
CGCAGGTACTGGCGCGCTATCGGACGCACGGTATCCAGGCCTACGACAGTGTCGAATACGGTGCGCTGCGCCTGCGCCTG
GGTAGCTTTGGCGAACCAGAGGGGCTGCGTGCCCAGCGACGTTTCTGGCGCGACCCCAGATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-462)

Domain of unknown function (DUF4131) (DUF4131)

(23-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-678)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A411MM08

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.501

97.162

0.588

Multiple sequence alignment