Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   EXN22_RS19875 Genome accession   NZ_CP035952
Coordinates   4352192..4352827 (-) Length   211 a.a.
NCBI ID   WP_130265669.1    Uniprot ID   A0A411MM57
Organism   Pseudomonas tructae strain SNU WT1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4347192..4357827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXN22_RS19845 (EXN22_19845) murB 4348289..4349308 (-) 1020 WP_130265664.1 UDP-N-acetylmuramate dehydrogenase -
  EXN22_RS19850 (EXN22_19850) - 4349305..4349769 (-) 465 WP_130265665.1 low molecular weight protein-tyrosine-phosphatase -
  EXN22_RS19855 (EXN22_19855) kdsB 4349769..4350533 (-) 765 WP_130265666.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  EXN22_RS19860 (EXN22_19860) - 4350530..4350715 (-) 186 WP_038994143.1 Trm112 family protein -
  EXN22_RS19865 (EXN22_19865) lpxK 4350754..4351764 (-) 1011 WP_130265667.1 tetraacyldisaccharide 4'-kinase -
  EXN22_RS19870 (EXN22_19870) - 4351764..4352195 (-) 432 WP_130265668.1 biopolymer transporter ExbD -
  EXN22_RS19875 (EXN22_19875) exbB 4352192..4352827 (-) 636 WP_130265669.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  EXN22_RS19880 (EXN22_19880) comA 4352898..4355120 (-) 2223 WP_130265670.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  EXN22_RS19885 (EXN22_19885) - 4355264..4355806 (+) 543 WP_130265671.1 DUF2062 domain-containing protein -
  EXN22_RS19890 (EXN22_19890) - 4355774..4356553 (-) 780 WP_130265672.1 ABC transporter permease -
  EXN22_RS19895 (EXN22_19895) - 4356550..4357482 (-) 933 WP_130265673.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22918.15 Da        Isoelectric Point: 6.8759

>NTDB_id=345242 EXN22_RS19875 WP_130265669.1 4352192..4352827(-) (exbB) [Pseudomonas tructae strain SNU WT1]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFMGTGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLSEVKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=345242 EXN22_RS19875 WP_130265669.1 4352192..4352827(-) (exbB) [Pseudomonas tructae strain SNU WT1]
GTGTGGGAATTGGTCAAGTCTGGTGGCTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCCGCCATGGCGATCGTCGC
CGAGCGTCTCTGGACCCTGCGCGCCAGCCGGGTCACACCACCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTTACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCCCTGGGCGAAATCCTTGCCGCCGGCCTTGCCAAC
TCGCGCCATGGCCGCGAGATCATGAAGGAATGCATCGAAGAGGCGGCTGCCCGGGTTATCCATGAGCTTGAGCGTTACAT
CAATGCCCTGGGCACCATCGCTGCCATGGCGCCGCTGCTCGGCCTGCTCGGCACCGTGCTGGGCATGATCGACATCTTCA
GTGCCTTCATGGGCACCGGTATGACCACCAATGCCGCAGTGCTGGCCGGCGGTATCTCCAAGGCGCTGATTACCACGGCA
GCGGGCCTGATGGTGGGTATCCCGTCGGTGTTCTTCCACCGTTTCCTGCAGCGCCGCATCGATGAACTGGTGGTCGGCAT
GGAGCAGGAGGCGATCAAGCTGGTCGAAGTGGTGCAGGGCGATCGTGATGTCGATCTCAGCGAGGTCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A411MM57

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848

Multiple sequence alignment