Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EXN22_RS00725 Genome accession   NZ_CP035952
Coordinates   146204..147697 (+) Length   497 a.a.
NCBI ID   WP_130262000.1    Uniprot ID   A0A411MC60
Organism   Pseudomonas tructae strain SNU WT1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 141204..152697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXN22_RS00695 (EXN22_00695) - 141811..142506 (+) 696 WP_130261995.1 HAD family hydrolase -
  EXN22_RS00700 (EXN22_00700) sutA 142563..142889 (-) 327 WP_130261996.1 transcriptional regulator SutA -
  EXN22_RS00705 (EXN22_00705) - 143354..144685 (-) 1332 WP_130261997.1 ammonium transporter -
  EXN22_RS00710 (EXN22_00710) glnK 144727..145065 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  EXN22_RS00715 (EXN22_00715) - 145395..145658 (+) 264 WP_130261998.1 accessory factor UbiK family protein -
  EXN22_RS00720 (EXN22_00720) - 145666..146019 (+) 354 WP_130261999.1 gamma-glutamylcyclotransferase family protein -
  EXN22_RS00725 (EXN22_00725) comM 146204..147697 (+) 1494 WP_130262000.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EXN22_RS00730 (EXN22_00730) - 147753..149180 (+) 1428 WP_130262001.1 mechanosensitive ion channel family protein -
  EXN22_RS00735 (EXN22_00735) - 149184..150470 (-) 1287 WP_130262002.1 FAD-binding oxidoreductase -
  EXN22_RS00740 (EXN22_00740) - 150567..152057 (-) 1491 WP_130262003.1 aldehyde dehydrogenase family protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52791.43 Da        Isoelectric Point: 7.1883

>NTDB_id=345225 EXN22_RS00725 WP_130262000.1 146204..147697(+) (comM) [Pseudomonas tructae strain SNU WT1]
MSLALVHSRAQVGVSAPAVSVEAHLANGLPALTLVGLPEATVKESKDRVRSAILNSGLEFPARRITLNLAPADLPKDGGR
FDLAIALGILAANGQFPIAALGEVECLGELALSGAIRSVQGVLPAALAAREAGRALVVPQENAEEACLASGLVVFAVGHL
LELVAHFNGQTPLNPYAANGLLLQIRPYPDLNEVQGQQAAKRALLVAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
REALEVAAIQSVASHVPLSSWPQRPFRHPHHSASGAALVGGGSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARAKDKIRFPARFQLVAAMNPCPCGYLGDPTGRCRCSSEQIQRYRNKLSGPLLDRIDLHLTVAREATALSADSSH
GESSATIAAQVATARDLQQQRQGCANAFLDLPGLRQYCGLSTADQNWLESACERLTLSLRAAHRLLKVARTLADLEQAQS
IGREHLAEALHYRPSNQ

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=345225 EXN22_RS00725 WP_130262000.1 146204..147697(+) (comM) [Pseudomonas tructae strain SNU WT1]
ATGTCCCTCGCCCTTGTCCACAGCCGTGCCCAGGTCGGTGTTTCGGCGCCGGCGGTCAGTGTTGAAGCGCATCTGGCCAA
CGGCCTGCCAGCGCTGACCCTGGTCGGCCTGCCGGAAGCGACTGTGAAGGAAAGCAAGGATCGGGTCCGCAGCGCGATCC
TCAATTCCGGCCTGGAATTCCCCGCCCGGCGCATCACCCTCAACCTCGCACCCGCCGACCTGCCCAAGGACGGCGGGCGT
TTCGACCTGGCCATCGCCCTGGGGATTCTCGCCGCCAACGGCCAGTTCCCCATTGCCGCGCTCGGCGAAGTGGAATGCCT
GGGCGAACTGGCGCTGTCCGGGGCCATTCGCTCGGTGCAAGGCGTACTGCCCGCTGCACTGGCGGCACGGGAAGCCGGCC
GGGCCCTGGTGGTGCCGCAGGAGAATGCCGAGGAAGCTTGCCTGGCATCCGGGCTGGTGGTATTTGCCGTCGGCCATCTG
CTGGAGCTGGTCGCCCACTTCAACGGCCAGACCCCTCTCAATCCTTACGCTGCCAACGGTTTGTTGCTGCAAATCCGCCC
CTACCCCGACCTCAACGAAGTACAGGGGCAACAAGCGGCCAAGCGCGCCCTGCTGGTCGCTGCTGCAGGCGCACACAACC
TGCTGTTCAGCGGCCCGCCTGGCACCGGCAAAACCCTGCTCGCCAGCCGCCTGCCCGGCCTGTTGCCACCACTGGATGAA
CGCGAAGCGCTGGAGGTGGCGGCCATCCAGTCGGTGGCCAGCCATGTGCCGCTGAGCAGTTGGCCGCAACGCCCATTTCG
TCATCCGCATCATTCGGCCTCCGGGGCTGCGCTGGTGGGCGGTGGTAGCCGACCGCAACCCGGGGAAATCACCCTGGCCC
ACCACGGCGTGTTGTTCCTCGATGAGTTGCCAGAGTTCGAACGGCGTGTACTGGAGGTGCTACGCGAACCCCTGGAATCC
GGCGAAATCGTCATCGCCCGGGCCAAGGACAAAATCCGCTTCCCGGCGCGCTTCCAACTGGTCGCCGCCATGAACCCCTG
CCCCTGTGGATATCTTGGCGACCCCACCGGCCGCTGCCGCTGCAGCAGCGAACAAATCCAGCGCTACCGCAACAAACTCT
CCGGCCCCCTGCTCGACCGCATCGACCTGCACCTGACCGTCGCCCGCGAAGCCACGGCACTGTCCGCCGACAGCAGCCAC
GGCGAAAGCAGCGCCACTATCGCCGCGCAAGTCGCCACCGCCCGCGACCTCCAGCAACAACGCCAGGGCTGCGCCAACGC
CTTCCTCGACCTGCCCGGCCTGCGCCAGTACTGCGGGTTATCCACAGCCGACCAGAACTGGCTGGAAAGCGCCTGCGAAC
GCCTGACCCTGTCCCTGCGCGCCGCCCACCGCCTGCTCAAGGTGGCGCGAACCCTGGCCGATCTGGAACAGGCTCAAAGC
ATCGGCCGCGAGCACCTGGCTGAGGCCCTGCACTATCGGCCCAGCAACCAGTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A411MC60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.162

99.598

0.559
  comM Vibrio campbellii strain DS40M4

55.96

99.598

0.557
  comM Haemophilus influenzae Rd KW20

54.291

100

0.547
  comM Glaesserella parasuis strain SC1401

53.094

100

0.535
  comM Legionella pneumophila str. Paris

49.798

99.799

0.497
  comM Legionella pneumophila strain ERS1305867

49.798

99.799

0.497
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.614

100

0.471

Multiple sequence alignment