Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   C9E88_RS01240 Genome accession   NZ_CP035934
Coordinates   275180..276664 (-) Length   494 a.a.
NCBI ID   WP_106983849.1    Uniprot ID   -
Organism   Acinetobacter cumulans strain WCHAc060092     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 270180..281664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9E88_RS01220 (C9E88_003050) ppa 270652..271188 (+) 537 WP_106983845.1 inorganic diphosphatase -
  C9E88_RS01225 (C9E88_003045) - 271294..272598 (-) 1305 WP_106983846.1 OprD family outer membrane porin -
  C9E88_RS01230 (C9E88_003040) - 273167..273937 (+) 771 WP_106983847.1 TorF family putative porin -
  C9E88_RS01235 (C9E88_003035) - 274310..275074 (+) 765 WP_106983848.1 TorF family putative porin -
  C9E88_RS01240 (C9E88_003030) comM 275180..276664 (-) 1485 WP_106983849.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  C9E88_RS01245 (C9E88_003025) - 276731..276958 (-) 228 WP_106983850.1 accessory factor UbiK family protein -
  C9E88_RS01250 (C9E88_003020) glnK 277233..277571 (+) 339 WP_004650081.1 P-II family nitrogen regulator -
  C9E88_RS01255 (C9E88_003015) - 277634..279031 (+) 1398 WP_106983851.1 ammonium transporter -
  C9E88_RS01260 (C9E88_003010) nrdR 279184..279642 (+) 459 WP_106983852.1 transcriptional regulator NrdR -
  C9E88_RS01265 (C9E88_003005) ribD 279669..280751 (+) 1083 WP_106983853.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 494 a.a.        Molecular weight: 53699.63 Da        Isoelectric Point: 7.8209

>NTDB_id=345137 C9E88_RS01240 WP_106983849.1 275180..276664(-) (comM) [Acinetobacter cumulans strain WCHAc060092]
MSFAKIYTRGLLGLHAPLIEVEVHLSQGLPSLTIVGLPEAAVRESKDRVRSAIINSGFQFPNKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPEQAAEGLEFVGELALDGHLRPITGILSIAIACQQLGHPLIVPQQNATEAAQLPNFEVFAAGHL
NEVCAHLAQKAPITAYTAPSTSIIGQYNFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLASILPPLNM
QENIEVASIYSIANSQHHFGQRPFRAPHHTASAIALVGGGSNPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQITFPANFQLVAAMNPCPCGYAFNQDARCQCSPDAIKRYQNRISGPLLDRIDLHIDVPPLHAHELNNQQAVE
NSTTVRARVLQAYEYQIQRQNTVNMALSPKQLEQFAQLDTAAQSIMAMAQQRLNLSARAYHRVLRVARTIADLAQAEQIQ
TAHLTEALSYRSPS

Nucleotide


Download         Length: 1485 bp        

>NTDB_id=345137 C9E88_RS01240 WP_106983849.1 275180..276664(-) (comM) [Acinetobacter cumulans strain WCHAc060092]
ATGTCTTTTGCCAAAATCTATACCCGAGGGCTCTTGGGCTTACATGCACCTTTAATTGAAGTAGAAGTGCATTTGAGTCA
AGGCTTGCCCTCTTTAACTATTGTGGGACTACCAGAAGCCGCTGTTCGTGAGAGTAAAGACCGCGTCCGTTCTGCCATTA
TCAATAGTGGTTTTCAGTTTCCAAACAAGCGACTAACGATTAATTTAGCCCCAGCAGATCTCCCCAAAGATGGCTCTCGT
TTAGACCTTCCGATTGCTTTAGGGATTTTGATTGCCTCTGGTCAATTGCCTGAACAGGCTGCAGAAGGGCTAGAATTTGT
TGGAGAGTTGGCGCTTGATGGCCATTTACGCCCAATTACAGGCATCTTAAGTATCGCTATTGCCTGCCAACAACTGGGAC
ATCCACTCATTGTGCCCCAACAAAATGCCACTGAGGCTGCGCAGCTCCCTAATTTTGAAGTCTTTGCTGCAGGGCATTTA
AATGAAGTATGTGCACATCTGGCCCAAAAAGCACCTATTACTGCCTACACCGCACCGAGTACATCCATAATAGGTCAATA
CAATTTTGACTTGGCCGATGTTAAAGGCCAACTTCGTCCACGACGTGCCCTCGAAATTGCCGCTGCAGGTGGACATTCAT
TATTGTTTAAAGGTCCACCAGGCACTGGAAAAACCTTATTGGCTTCACGTTTGGCAAGTATATTACCGCCACTGAATATG
CAGGAAAACATTGAAGTCGCCAGTATTTATTCTATCGCCAATAGTCAGCATCACTTTGGACAACGCCCCTTTCGAGCCCC
ACACCATACGGCATCTGCAATTGCCTTAGTGGGAGGTGGTTCAAACCCAAAACCTGGGGAAATTACCTTGGCACATTTAG
GAGTGCTTTTTTTAGATGAACTCCCTGAGTTTGACCGCAAAGTCTTGGAAGTTTTAAGGCAACCGCTGGAATCTAAAGAG
ATTGTCATTTCACGGGCATCACGCCAAATTACCTTTCCAGCCAACTTTCAGTTGGTGGCTGCCATGAACCCTTGCCCATG
TGGTTATGCATTTAACCAAGATGCGCGTTGCCAGTGCTCACCCGATGCAATTAAACGCTATCAAAATCGAATTTCTGGGC
CTTTACTCGACCGCATTGATCTGCATATTGATGTACCACCACTACATGCACATGAGTTAAATAATCAACAAGCTGTAGAA
AACTCGACCACAGTTCGCGCACGTGTATTACAAGCCTACGAATATCAAATACAACGGCAAAACACGGTGAACATGGCACT
TAGCCCTAAGCAATTAGAACAATTTGCCCAGCTGGATACGGCAGCGCAAAGCATCATGGCTATGGCCCAACAACGACTCA
ATTTATCGGCACGGGCGTATCATCGTGTTCTACGCGTTGCACGTACCATTGCAGACCTCGCACAGGCCGAGCAGATTCAA
ACGGCGCATTTAACAGAAGCCTTGTCCTATCGCAGTCCATCCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.911

100

0.522
  comM Glaesserella parasuis strain SC1401

51

100

0.516
  comM Haemophilus influenzae Rd KW20

51

100

0.516
  comM Vibrio campbellii strain DS40M4

51.21

100

0.514
  comM Legionella pneumophila str. Paris

49.395

100

0.496
  comM Legionella pneumophila strain ERS1305867

49.395

100

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.924

100

0.468

Multiple sequence alignment