Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EWA64_RS06985 Genome accession   NZ_CP035921
Coordinates   1309105..1309656 (-) Length   183 a.a.
NCBI ID   WP_061894895.1    Uniprot ID   -
Organism   Vibrio cidicii strain 2423-01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1304105..1314656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EWA64_RS06965 - 1304542..1304865 (-) 324 WP_065860333.1 MSHA biogenesis protein MshK -
  EWA64_RS06970 pilO 1304858..1305508 (-) 651 WP_061894892.1 type 4a pilus biogenesis protein PilO -
  EWA64_RS06975 - 1305508..1306947 (-) 1440 WP_061894893.1 hypothetical protein -
  EWA64_RS06980 csrD 1306960..1308954 (-) 1995 WP_061894894.1 RNase E specificity factor CsrD -
  EWA64_RS06985 ssb 1309105..1309656 (-) 552 WP_061894895.1 single-stranded DNA-binding protein Machinery gene
  EWA64_RS06990 qstR 1309952..1310599 (+) 648 WP_061894896.1 LuxR C-terminal-related transcriptional regulator Regulator
  EWA64_RS06995 galU 1310765..1311637 (+) 873 WP_061894897.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  EWA64_RS07000 uvrA 1311780..1314602 (+) 2823 WP_039435748.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20157.21 Da        Isoelectric Point: 5.6659

>NTDB_id=344988 EWA64_RS06985 WP_061894895.1 1309105..1309656(-) (ssb) [Vibrio cidicii strain 2423-01]
MASRGINKVILVGNLGNDPEIRYMPSGGAVANITVATSETWRDKATGEPREKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYSTDIVVQGYSGVMQMLGGRQQGGAPAMGGAPQAQQQGGWGQPQQPAAHQQQSYQAPAQQHAP
QQSQQSQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=344988 EWA64_RS06985 WP_061894895.1 1309105..1309656(-) (ssb) [Vibrio cidicii strain 2423-01]
ATGGCCAGCCGTGGAATTAATAAAGTAATCTTGGTAGGGAACCTAGGGAACGACCCTGAAATTCGTTATATGCCAAGCGG
CGGTGCAGTGGCTAACATTACCGTTGCTACTTCGGAAACTTGGCGCGACAAAGCGACTGGCGAACCGCGTGAAAAAACGG
AATGGCATCGTGTTACCCTGTATGGAAAACTCGCTGAAGTCGCAGGTGAATACCTGCGTAAAGGCTCTCAGGTTTACATT
GAAGGCCAATTGCAGACGCGCAAATGGCAAGATCAAAATGGTCAAGATCGCTACTCAACGGACATCGTGGTACAAGGCTA
CAGCGGTGTGATGCAGATGCTTGGCGGACGCCAGCAAGGCGGCGCGCCCGCGATGGGTGGTGCACCTCAAGCGCAGCAGC
AAGGTGGGTGGGGACAGCCGCAACAGCCAGCCGCGCATCAGCAGCAGTCATATCAAGCACCTGCACAGCAGCATGCGCCG
CAGCAATCTCAACAATCTCAGCCGCAGTACAACGAACCGCCAATGGATTTCGATGACGATATTCCTTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.522

100

0.82
  ssb Glaesserella parasuis strain SC1401

54.497

100

0.563
  ssb Neisseria meningitidis MC58

48.387

100

0.492
  ssb Neisseria gonorrhoeae MS11

48.387

100

0.492

Multiple sequence alignment