Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   EWA64_RS06990 Genome accession   NZ_CP035921
Coordinates   1309952..1310599 (+) Length   215 a.a.
NCBI ID   WP_061894896.1    Uniprot ID   -
Organism   Vibrio cidicii strain 2423-01     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1304952..1315599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EWA64_RS06975 - 1305508..1306947 (-) 1440 WP_061894893.1 hypothetical protein -
  EWA64_RS06980 csrD 1306960..1308954 (-) 1995 WP_061894894.1 RNase E specificity factor CsrD -
  EWA64_RS06985 ssb 1309105..1309656 (-) 552 WP_061894895.1 single-stranded DNA-binding protein Machinery gene
  EWA64_RS06990 qstR 1309952..1310599 (+) 648 WP_061894896.1 LuxR C-terminal-related transcriptional regulator Regulator
  EWA64_RS06995 galU 1310765..1311637 (+) 873 WP_061894897.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  EWA64_RS07000 uvrA 1311780..1314602 (+) 2823 WP_039435748.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24651.67 Da        Isoelectric Point: 9.3465

>NTDB_id=344989 EWA64_RS06990 WP_061894896.1 1309952..1310599(+) (qstR) [Vibrio cidicii strain 2423-01]
MRKSSYARSLFFLQRANAQPPAFIDTLARAIELPIPAITTETLMRTDPLHRNRILLIDYQEHKVLLLQIRNLPLICKNFE
TIIFNVPKRLSTDELLGLGQSKAVFYADCSMEKIAEGVIAVIEGQNWLPRHVQAQLLHYYRNMFNTHTAPANVDLTIREI
QVLRCLQAGASNAHIAEDLFISEYTVKSHLYQIFKKLSVKNRLQATAWADQHLLS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=344989 EWA64_RS06990 WP_061894896.1 1309952..1310599(+) (qstR) [Vibrio cidicii strain 2423-01]
ATGAGAAAATCCTCCTATGCCAGAAGCTTGTTCTTTCTCCAGCGAGCAAACGCACAACCCCCAGCATTTATCGATACCTT
AGCGCGCGCCATCGAGCTTCCCATACCAGCAATTACCACAGAAACCTTGATGCGAACCGATCCCTTGCACCGTAACCGCA
TCTTGTTGATCGACTATCAAGAACACAAAGTATTGCTGTTACAAATTAGAAACCTGCCACTGATTTGCAAAAACTTTGAA
ACCATCATTTTCAACGTACCAAAACGATTGAGCACCGATGAGCTGCTCGGCCTTGGACAGAGCAAAGCGGTTTTCTACGC
AGATTGCAGCATGGAAAAAATTGCCGAAGGCGTTATTGCCGTGATTGAAGGGCAAAACTGGCTACCTCGCCACGTTCAGG
CGCAGCTTCTGCATTACTACCGCAATATGTTCAACACCCATACCGCACCCGCCAATGTAGATTTGACCATTCGCGAAATT
CAAGTGCTACGCTGCTTACAAGCAGGAGCGAGCAATGCTCACATCGCCGAGGATCTGTTTATCAGCGAGTACACGGTCAA
ATCACATCTTTATCAGATTTTTAAAAAGCTCTCGGTAAAAAATCGTCTTCAGGCCACCGCCTGGGCCGATCAACATCTAC
TCTCGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

63.594

100

0.642
  qstR Vibrio campbellii strain DS40M4

63.256

100

0.633
  qstR Vibrio cholerae strain A1552

52.995

100

0.535

Multiple sequence alignment