Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   EPB55_RS13945 Genome accession   NZ_CP035731
Coordinates   2824525..2824827 (+) Length   100 a.a.
NCBI ID   WP_011078144.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 2142-77     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2819525..2829827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB55_RS13930 lon 2819539..2821890 (+) 2352 WP_011078147.1 endopeptidase La -
  EPB55_RS13935 - 2822084..2822356 (+) 273 WP_013572181.1 HU family DNA-binding protein -
  EPB55_RS13940 ppiD 2822533..2824392 (+) 1860 WP_072602844.1 peptidylprolyl isomerase -
  EPB55_RS13945 comEA 2824525..2824827 (+) 303 WP_011078144.1 helix-hairpin-helix domain-containing protein Machinery gene
  EPB55_RS13950 rrtA 2824874..2825434 (-) 561 WP_277753060.1 rhombosortase -
  EPB55_RS13955 - 2825438..2826046 (+) 609 WP_101956801.1 DTW domain-containing protein -
  EPB55_RS13960 - 2826068..2827399 (-) 1332 WP_058645309.1 anti-phage deoxyguanosine triphosphatase -
  EPB55_RS13965 yfbR 2827405..2827953 (-) 549 WP_231846899.1 5'-deoxynucleotidase -
  EPB55_RS13970 - 2828070..2829284 (-) 1215 WP_011080966.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 10866.71 Da        Isoelectric Point: 9.6573

>NTDB_id=344131 EPB55_RS13945 WP_011078144.1 2824525..2824827(+) (comEA) [Vibrio vulnificus strain 2142-77]
MKQVITLLAMLMAFSFPSVSFADSATKAADKYEGIEISVNINTATAEEIAMMLKGVGIKKAQQIVDFREANGPFKTVDEL
AQVKGIGKSTIEKNQSRIKL

Nucleotide


Download         Length: 303 bp        

>NTDB_id=344131 EPB55_RS13945 WP_011078144.1 2824525..2824827(+) (comEA) [Vibrio vulnificus strain 2142-77]
ATGAAACAGGTAATTACCCTTTTAGCCATGCTAATGGCATTCTCTTTTCCTTCCGTTTCTTTTGCGGACTCTGCAACGAA
AGCAGCCGATAAATATGAAGGCATTGAGATTTCCGTCAATATCAACACGGCGACAGCAGAAGAAATTGCCATGATGTTAA
AAGGCGTTGGTATTAAAAAAGCTCAGCAAATTGTTGATTTTAGAGAAGCTAATGGACCGTTTAAAACGGTTGATGAGTTA
GCTCAAGTGAAAGGAATCGGTAAATCAACGATTGAGAAAAATCAGTCACGGATTAAGTTGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(38-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

59

100

0.59
  comEA Vibrio campbellii strain DS40M4

54

100

0.54
  comEA Vibrio cholerae C6706

52.041

98

0.51
  comEA Vibrio cholerae strain A1552

52.041

98

0.51
  comEA/comE1 Glaesserella parasuis strain SC1401

60

60

0.36

Multiple sequence alignment