Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | EPB55_RS07670 | Genome accession | NZ_CP035731 |
| Coordinates | 1508529..1509068 (-) | Length | 179 a.a. |
| NCBI ID | WP_011079389.1 | Uniprot ID | Q7MHB8 |
| Organism | Vibrio vulnificus strain 2142-77 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1503529..1514068
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EPB55_RS07650 | - | 1503946..1504266 (-) | 321 | WP_011079393.1 | MSHA biogenesis protein MshK | - |
| EPB55_RS07655 | gspM | 1504259..1504909 (-) | 651 | WP_045596391.1 | type II secretion system protein GspM | - |
| EPB55_RS07660 | - | 1504906..1506366 (-) | 1461 | WP_045596392.1 | hypothetical protein | - |
| EPB55_RS07665 | csrD | 1506379..1508376 (-) | 1998 | WP_045596393.1 | RNase E specificity factor CsrD | - |
| EPB55_RS07670 | ssb | 1508529..1509068 (-) | 540 | WP_011079389.1 | single-stranded DNA-binding protein | Machinery gene |
| EPB55_RS07675 | qstR | 1509368..1510015 (+) | 648 | WP_045596394.1 | response regulator transcription factor | Regulator |
| EPB55_RS07680 | galU | 1510203..1511075 (+) | 873 | WP_011079387.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| EPB55_RS07685 | uvrA | 1511217..1514039 (+) | 2823 | WP_043877332.1 | excinuclease ABC subunit UvrA | - |
Sequence
Protein
Download Length: 179 a.a. Molecular weight: 19794.97 Da Isoelectric Point: 5.2358
>NTDB_id=344111 EPB55_RS07670 WP_011079389.1 1508529..1509068(-) (ssb) [Vibrio vulnificus strain 2142-77]
MASRGINKVILVGNLGNDPEIRYMPSGGAVANITVATSETWRDKATGEPREKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYSTEVVVQGYNGIMQMLGGRQQQGGAPAMGGAPQQQQGGWGQPQQPAAQPSYQKQAPAQQQPM
QSQPQYNEPPMDFDDDIPF
MASRGINKVILVGNLGNDPEIRYMPSGGAVANITVATSETWRDKATGEPREKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYSTEVVVQGYNGIMQMLGGRQQQGGAPAMGGAPQQQQGGWGQPQQPAAQPSYQKQAPAQQQPM
QSQPQYNEPPMDFDDDIPF
Nucleotide
Download Length: 540 bp
>NTDB_id=344111 EPB55_RS07670 WP_011079389.1 1508529..1509068(-) (ssb) [Vibrio vulnificus strain 2142-77]
ATGGCCAGCCGTGGAATTAACAAAGTAATCTTGGTAGGGAACTTAGGTAACGACCCTGAAATTCGTTACATGCCAAGTGG
CGGTGCGGTGGCGAATATCACCGTTGCAACTTCAGAAACTTGGCGCGACAAAGCGACAGGCGAGCCGCGTGAGAAAACAG
AATGGCACCGTGTGACGTTATACGGCAAGCTGGCAGAAGTCGCGGGTGAATACCTACGCAAAGGTTCTCAAGTATACATT
GAAGGACAACTGCAAACGCGTAAATGGCAAGACCAAAATGGTCAAGACCGTTATTCAACTGAAGTCGTTGTACAAGGCTA
CAATGGCATTATGCAAATGTTGGGTGGTCGTCAGCAGCAAGGTGGCGCTCCAGCTATGGGTGGTGCTCCGCAGCAGCAAC
AAGGTGGTTGGGGTCAGCCTCAACAGCCAGCCGCACAGCCGTCTTACCAAAAGCAGGCTCCAGCGCAACAACAGCCAATG
CAGTCTCAGCCTCAGTACAATGAGCCGCCAATGGACTTTGATGACGACATTCCGTTCTAA
ATGGCCAGCCGTGGAATTAACAAAGTAATCTTGGTAGGGAACTTAGGTAACGACCCTGAAATTCGTTACATGCCAAGTGG
CGGTGCGGTGGCGAATATCACCGTTGCAACTTCAGAAACTTGGCGCGACAAAGCGACAGGCGAGCCGCGTGAGAAAACAG
AATGGCACCGTGTGACGTTATACGGCAAGCTGGCAGAAGTCGCGGGTGAATACCTACGCAAAGGTTCTCAAGTATACATT
GAAGGACAACTGCAAACGCGTAAATGGCAAGACCAAAATGGTCAAGACCGTTATTCAACTGAAGTCGTTGTACAAGGCTA
CAATGGCATTATGCAAATGTTGGGTGGTCGTCAGCAGCAAGGTGGCGCTCCAGCTATGGGTGGTGCTCCGCAGCAGCAAC
AAGGTGGTTGGGGTCAGCCTCAACAGCCAGCCGCACAGCCGTCTTACCAAAAGCAGGCTCCAGCGCAACAACAGCCAATG
CAGTCTCAGCCTCAGTACAATGAGCCGCCAATGGACTTTGATGACGACATTCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
83.333 |
100 |
0.838 |
| ssb | Glaesserella parasuis strain SC1401 |
53.804 |
100 |
0.553 |
| ssb | Neisseria meningitidis MC58 |
46.237 |
100 |
0.48 |
| ssb | Neisseria gonorrhoeae MS11 |
46.237 |
100 |
0.48 |