Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   EPB55_RS07675 Genome accession   NZ_CP035731
Coordinates   1509368..1510015 (+) Length   215 a.a.
NCBI ID   WP_045596394.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 2142-77     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1504368..1515015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB55_RS07660 - 1504906..1506366 (-) 1461 WP_045596392.1 hypothetical protein -
  EPB55_RS07665 csrD 1506379..1508376 (-) 1998 WP_045596393.1 RNase E specificity factor CsrD -
  EPB55_RS07670 ssb 1508529..1509068 (-) 540 WP_011079389.1 single-stranded DNA-binding protein Machinery gene
  EPB55_RS07675 qstR 1509368..1510015 (+) 648 WP_045596394.1 response regulator transcription factor Regulator
  EPB55_RS07680 galU 1510203..1511075 (+) 873 WP_011079387.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  EPB55_RS07685 uvrA 1511217..1514039 (+) 2823 WP_043877332.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24691.67 Da        Isoelectric Point: 9.8565

>NTDB_id=344112 EPB55_RS07675 WP_045596394.1 1509368..1510015(+) (qstR) [Vibrio vulnificus strain 2142-77]
MRKSSYARKPFFISLQNEQTPEFVTVLAKQIQMEIPVITPATLMQADPNHRNRILLIDHQQHKVLLREIKNLPLIWKGFE
TVLCNVPSRLTTEELIGFGQCKAIFYRDTAMTDMAKGLNSVINGKSWLPRDVSAQLIHYYRNMVCSHTSPVNVDLTMREI
QVLRCVQSGKSNSQIAEDLFISEFTVKSHLYQTFRKLSVKNRVQAAAWADQNLIS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=344112 EPB55_RS07675 WP_045596394.1 1509368..1510015(+) (qstR) [Vibrio vulnificus strain 2142-77]
ATGAGAAAATCTTCTTACGCGCGGAAGCCATTTTTTATCAGTTTGCAAAACGAACAAACTCCTGAGTTCGTCACGGTATT
AGCTAAACAGATTCAAATGGAGATCCCTGTGATTACCCCGGCAACGCTCATGCAAGCCGATCCCAATCATCGTAATCGCA
TCTTATTGATTGATCATCAGCAACATAAGGTGCTGTTGAGAGAAATTAAAAACCTACCCCTGATATGGAAAGGGTTTGAA
ACGGTCCTGTGTAATGTACCTAGCCGATTGACGACTGAGGAACTGATCGGTTTTGGCCAGTGCAAAGCGATCTTCTACCG
AGACACCGCCATGACAGACATGGCAAAAGGACTAAATTCGGTGATTAATGGCAAAAGCTGGCTGCCACGCGACGTCAGCG
CACAACTCATCCACTACTATCGAAATATGGTTTGTTCACACACTTCACCAGTGAATGTGGATCTCACGATGAGAGAAATT
CAAGTGTTACGCTGCGTGCAGTCTGGCAAGTCAAATTCTCAAATCGCCGAAGATCTTTTCATTAGTGAATTCACCGTAAA
GTCGCATCTCTATCAAACCTTTAGAAAGCTCTCCGTGAAGAATCGTGTCCAAGCTGCCGCGTGGGCTGACCAAAATTTGA
TCTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

60.93

100

0.609
  qstR Vibrio campbellii strain DS40M4

60.93

100

0.609
  qstR Vibrio cholerae strain A1552

47.196

99.535

0.47

Multiple sequence alignment