Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ELE36_RS00685 Genome accession   NZ_CP035704
Coordinates   142324..143829 (-) Length   501 a.a.
NCBI ID   WP_129831267.1    Uniprot ID   A0A411HEY6
Organism   Pseudolysobacter antarcticus strain AQ6-296     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 137324..148829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELE36_RS00665 (ELE36_00665) - 137878..140067 (-) 2190 WP_129831263.1 xanthine dehydrogenase family protein molybdopterin-binding subunit -
  ELE36_RS00670 (ELE36_00670) - 140064..140525 (-) 462 WP_129831264.1 (2Fe-2S)-binding protein -
  ELE36_RS00675 (ELE36_00675) - 140585..141166 (-) 582 WP_129831265.1 nucleotidyltransferase family protein -
  ELE36_RS00680 (ELE36_00680) - 141159..142223 (-) 1065 WP_129831266.1 XdhC/CoxI family protein -
  ELE36_RS00685 (ELE36_00685) comM 142324..143829 (-) 1506 WP_129831267.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ELE36_RS00690 (ELE36_00690) - 144440..144712 (-) 273 WP_129831268.1 accessory factor UbiK family protein -
  ELE36_RS00695 (ELE36_00695) - 144954..145292 (+) 339 WP_129831269.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 53352.24 Da        Isoelectric Point: 8.2697

>NTDB_id=343987 ELE36_RS00685 WP_129831267.1 142324..143829(-) (comM) [Pseudolysobacter antarcticus strain AQ6-296]
MSLAIVNSRAQDGVAAPPVTVEVHLSGGLPGTSIVGLPETAVKEARDRVRVAIQNAQLEYPARRVTVSLAPADLPKDGGR
FDLPIALGILAAAGHIPKEPLAHYEFLGELALSGELRGVTGVLPAVLKAADAGRSVIVPQQNAAEASLASSTVTYTANSL
LEVCAFLRGVGRLPEAVAPPLQAIDITFPDLLDVRGQAQARRALEVAAAGGHHLLFIGPPGTGKTMLASRLPGILSPMSE
AEALETSAVRSISGYGIDLHKWKMRPFRAPHHTASAVALVGGGAVPRPGEISLAHNGVLFLDELPEFERRVLEVLREPLE
SGRIVISRAARQAEFPANFQLVAAMNPCPCGYSGDPSGRCACTPDQILRYRARVSGPLLDRIDLQVEVPRVPIAELRQRA
GTEESSASVLLRVIAARERQLARAGMANAQLGNREVERDCALSAGDNTLLERAVDKLGLSARAYHRILRVARTIADLDGS
AHIHSAHLSEAIQYRRLDRRN

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=343987 ELE36_RS00685 WP_129831267.1 142324..143829(-) (comM) [Pseudolysobacter antarcticus strain AQ6-296]
ATGAGTCTGGCGATCGTCAACAGCCGCGCCCAGGATGGCGTCGCCGCGCCGCCGGTCACGGTCGAGGTACATCTGTCCGG
TGGATTGCCCGGAACGTCAATTGTCGGCTTGCCCGAAACCGCCGTGAAGGAAGCGCGCGATCGCGTTCGTGTCGCGATTC
AGAACGCACAACTGGAATATCCTGCCCGTCGAGTTACGGTGAGTCTGGCGCCAGCAGATTTGCCGAAGGACGGTGGGCGA
TTCGATCTGCCGATCGCGCTCGGTATTCTTGCCGCGGCCGGTCACATTCCCAAAGAGCCACTCGCGCATTACGAATTTCT
CGGTGAGCTGGCATTGTCCGGCGAGTTGCGCGGCGTCACCGGCGTATTGCCGGCGGTGCTGAAAGCCGCCGATGCCGGGC
GCAGCGTGATCGTGCCGCAACAAAACGCCGCCGAAGCATCGCTGGCAAGTTCGACCGTCACCTATACCGCGAATTCGTTG
CTCGAAGTCTGTGCGTTTTTGCGCGGTGTCGGACGCCTGCCCGAAGCCGTCGCGCCACCGCTGCAAGCGATCGATATCAC
GTTTCCCGATCTGCTCGATGTGCGTGGTCAGGCACAAGCGCGGCGTGCGCTCGAAGTTGCGGCAGCGGGAGGTCATCACC
TGCTTTTTATCGGGCCGCCCGGCACCGGCAAGACCATGCTGGCGAGTCGCCTGCCGGGAATCCTCTCGCCGATGAGCGAA
GCCGAAGCGCTCGAAACCAGCGCGGTGCGCTCGATCAGCGGCTACGGTATAGATTTGCACAAGTGGAAAATGCGACCTTT
CAGAGCGCCGCACCATACGGCGTCGGCGGTCGCACTGGTTGGCGGTGGTGCGGTGCCTCGGCCCGGCGAGATTTCCCTCG
CCCATAACGGCGTCTTATTTCTTGATGAATTGCCCGAGTTTGAGCGTAGGGTACTCGAAGTTTTGCGTGAGCCACTAGAG
TCTGGTCGCATCGTGATTTCGCGTGCAGCGCGACAAGCAGAGTTTCCCGCGAATTTTCAGCTCGTAGCCGCAATGAATCC
ATGTCCATGCGGTTACTCGGGTGATCCGTCGGGACGCTGCGCCTGCACGCCCGATCAAATACTGCGTTATCGCGCCCGCG
TTTCCGGGCCATTGCTGGATCGCATCGATCTGCAAGTCGAAGTGCCTCGTGTGCCGATCGCGGAATTGCGCCAGCGTGCC
GGTACCGAGGAATCCAGCGCCAGCGTGCTGCTACGCGTGATTGCGGCGCGCGAGCGCCAACTCGCCCGCGCCGGTATGGC
GAACGCGCAGCTCGGCAATCGCGAAGTCGAACGCGATTGCGCCTTGAGCGCTGGCGATAACACCTTGCTCGAACGCGCCG
TCGACAAGCTCGGCCTGTCCGCGCGCGCCTATCACCGCATCCTGCGCGTGGCACGCACAATCGCCGATCTGGATGGCAGC
GCGCACATCCACAGCGCGCATCTCAGCGAAGCGATTCAATATCGGCGCCTGGATCGACGTAACTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A411HEY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

59

99.8

0.589
  comM Glaesserella parasuis strain SC1401

57.874

100

0.587
  comM Haemophilus influenzae Rd KW20

57.54

100

0.579
  comM Vibrio campbellii strain DS40M4

57.114

99.601

0.569
  comM Legionella pneumophila str. Paris

52.716

99.202

0.523
  comM Legionella pneumophila strain ERS1305867

52.716

99.202

0.523
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.93

100

0.473

Multiple sequence alignment