Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EPB54_RS17550 Genome accession   NZ_CP035701
Coordinates   3480416..3481420 (+) Length   334 a.a.
NCBI ID   WP_079856737.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 2012AW-0154     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3475416..3486420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB54_RS17535 ilvE 3477059..3477997 (-) 939 WP_015297538.1 branched-chain-amino-acid transaminase -
  EPB54_RS17540 ilvM 3478010..3478294 (-) 285 WP_005378958.1 acetolactate synthase 2 small subunit -
  EPB54_RS17545 ilvG 3478305..3479951 (-) 1647 WP_029865304.1 acetolactate synthase 2 catalytic subunit -
  EPB54_RS17550 comM 3480416..3481420 (+) 1005 WP_079856737.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EPB54_RS17555 - 3481478..3483826 (+) 2349 WP_154119983.1 hypothetical protein -
  EPB54_RS17560 - 3483820..3486231 (+) 2412 WP_005378979.1 hypothetical protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36164.66 Da        Isoelectric Point: 8.7215

>NTDB_id=343980 EPB54_RS17550 WP_079856737.1 3480416..3481420(+) (comM) [Vibrio parahaemolyticus strain 2012AW-0154]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDRLKNYEFVGELALSGGLRPVKGVLPAALAASKVGRHLVVPHVNGDQAALVGKEQHKSAQSL
LEVCAELCGQHRLNLYQTPKRKTVEKHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASVASLTQSEINEHNWKSRPFRAPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDETQKISMIETYQFFINLL
NHMNFMIKKIHFLH

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=343980 EPB54_RS17550 WP_079856737.1 3480416..3481420(+) (comM) [Vibrio parahaemolyticus strain 2012AW-0154]
ATGGGGCTGGCAATCATTCATAGTCGGGCAAGTGTCGGGGTGCAAGCGCCGTCAGTTAGTGTGGAAGTGCATATCAGTAA
TGGCATGCCCGGCTTTACTCTCGTTGGGTTGCCGGAGACTACGGTAAAGGAATCCAAAGATCGTGTACGCAGTGCGATCA
TCAATTCAAATTTCCAGTTTCCAGCCAAGCGCATTACGGTCAATTTGGCCCCGGCGGATTTACCTAAAGAAGGTGGTCGT
TTTGATTTGCCTATCGCATTGGGTATTTTGGCAGCTTCAGAGCAAATCGCGACAGATAGGCTCAAAAACTACGAATTTGT
TGGCGAATTAGCCCTGTCTGGAGGGTTAAGACCTGTCAAAGGTGTGCTTCCTGCCGCGTTGGCTGCAAGCAAAGTAGGAC
GTCATTTGGTGGTGCCTCATGTCAATGGCGATCAAGCGGCGCTGGTGGGCAAAGAGCAACATAAGTCAGCGCAATCCTTA
CTTGAGGTGTGTGCGGAGTTATGTGGTCAGCATCGTCTCAATCTTTATCAAACTCCGAAGCGAAAAACGGTTGAAAAGCA
TGGTCGAGATCTACAAGACATCATTGGCCAGCAACAAGGCAAGCGTGCTCTAGAAATTGCGGCGGCTGGAAACCACAACC
TACTTTTTCTTGGTCCTCCTGGTACAGGAAAAACCATGCTGGCATCGCGTTTATGCGACTTACTGCCGGAGATGAGCGAC
GAAGAAGCGATGGAAACGGCTTCAGTCGCATCACTGACGCAAAGTGAGATTAATGAGCACAACTGGAAGTCGCGTCCGTT
TCGTGCGCCGCACCATTCCAGTTCGATGGCTGCATTAGTTGGTGGTGGCTCGGTGCCAAGACCGGGTGAGATTTCTTTGG
CTCACAATGGGTTATTGTTCCTTGATGAAACTCAGAAAATCTCAATGATTGAAACATATCAATTCTTTATTAACTTATTG
AACCATATGAATTTTATGATTAAAAAAATCCATTTTTTACATTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-308)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

95.38

90.719

0.865
  comM Vibrio cholerae strain A1552

85.149

90.719

0.772
  comM Haemophilus influenzae Rd KW20

67.101

91.916

0.617
  comM Glaesserella parasuis strain SC1401

65.359

91.617

0.599
  comM Legionella pneumophila str. Paris

54.125

90.719

0.491
  comM Legionella pneumophila strain ERS1305867

54.125

90.719

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.66

92.515

0.413

Multiple sequence alignment