Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | PARA_RS05525 | Genome accession | NC_015964 |
| Coordinates | 1098734..1099741 (+) | Length | 335 a.a. |
| NCBI ID | WP_041918230.1 | Uniprot ID | - |
| Organism | Haemophilus parainfluenzae T3T1 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1093734..1104741
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PARA_RS05495 (PARA_10850) | - | 1094359..1095627 (+) | 1269 | WP_014064903.1 | NRAMP family divalent metal transporter | - |
| PARA_RS05500 (PARA_10860) | nudB | 1095738..1096187 (+) | 450 | WP_014064904.1 | dihydroneopterin triphosphate diphosphatase | - |
| PARA_RS05505 (PARA_10870) | - | 1096235..1096975 (+) | 741 | WP_005696686.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| PARA_RS05510 (PARA_10880) | - | 1096993..1097427 (+) | 435 | WP_005696685.1 | hypothetical protein | - |
| PARA_RS05515 (PARA_10890) | ruvC | 1097478..1098050 (+) | 573 | WP_005697069.1 | crossover junction endodeoxyribonuclease RuvC | - |
| PARA_RS05520 (PARA_10900) | ruvA | 1098109..1098720 (+) | 612 | WP_014064905.1 | Holliday junction branch migration protein RuvA | Machinery gene |
| PARA_RS05525 (PARA_10910) | ruvB | 1098734..1099741 (+) | 1008 | WP_041918230.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| PARA_RS05530 (PARA_10920) | - | 1099797..1100108 (-) | 312 | WP_014064907.1 | DUF5339 domain-containing protein | - |
| PARA_RS05535 (PARA_10930) | - | 1100567..1102132 (+) | 1566 | WP_014064908.1 | cytochrome ubiquinol oxidase subunit I | - |
| PARA_RS05540 (PARA_10940) | cydB | 1102147..1103286 (+) | 1140 | WP_014064909.1 | cytochrome d ubiquinol oxidase subunit II | - |
| PARA_RS10370 | - | 1103298..1103396 (+) | 99 | WP_101494276.1 | cytochrome bd oxidase small subunit, CydX/CbdX family | - |
| PARA_RS05545 (PARA_10950) | ybgE | 1103399..1103686 (+) | 288 | WP_014064910.1 | cyd operon protein YbgE | - |
| PARA_RS05550 (PARA_10960) | ybgC | 1103758..1104186 (+) | 429 | WP_014064911.1 | tol-pal system-associated acyl-CoA thioesterase | - |
Sequence
Protein
Download Length: 335 a.a. Molecular weight: 37153.55 Da Isoelectric Point: 4.7327
>NTDB_id=34397 PARA_RS05525 WP_041918230.1 1098734..1099741(+) (ruvB) [Haemophilus parainfluenzae T3T1]
MIEADRIISSQAKMDEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVTRSASCLNLELEDKAAFEVARRSRGTPRIANRLLRRVRDFADVRNDG
IISADIAKQALSMLDVDDAGFDYLDRKLLTAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSLTYRHFGLQKPSE
MIEADRIISSQAKMDEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVTRSASCLNLELEDKAAFEVARRSRGTPRIANRLLRRVRDFADVRNDG
IISADIAKQALSMLDVDDAGFDYLDRKLLTAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSLTYRHFGLQKPSE
Nucleotide
Download Length: 1008 bp
>NTDB_id=34397 PARA_RS05525 WP_041918230.1 1098734..1099741(+) (ruvB) [Haemophilus parainfluenzae T3T1]
ATGATCGAAGCAGATAGAATTATTAGCAGTCAGGCAAAGATGGATGAAGATGTCATCGATCGTGCGATTCGTCCAAAGCT
TTTAGCGGACTATGTGGGGCAGCCACAAGTGCGAGAGCAGATGGATATTTTCATTAAGGCGGCAAAATTGCGGCAAGATG
CCTTAGATCATCTTTTGATCTTCGGCCCTCCAGGTTTAGGAAAAACGACGCTAGCTAATATTGTCGCGAATGAAATGGGT
GTAAATATTCGCACAACATCGGGTCCTGTTCTTGAAAAAGCGGGAGATTTAGCGGCAATGCTGACAAATCTTGAACCCCA
TGATGTGTTGTTTATTGATGAAATTCACCGTCTTTCCCCTGCGATTGAAGAAGTGCTTTATCCAGCAATGGAAGATTATC
AGCTGGACATTATGATCGGCGAAGGCCCGGCCGCACGTTCGATTAAATTGGATTTACCACCTTTTACATTAATTGGTGCA
ACAACTCGAGCGGGTTCTTTAACTTCGCCACTACGTGATCGTTTTGGTATTGTTCAGCGTTTAGAATTTTATTCCGTTGA
AGATTTAACTTCTATTGTGACAAGAAGTGCCTCTTGCTTAAATCTAGAATTAGAAGATAAAGCGGCTTTTGAAGTGGCGC
GTCGTTCACGTGGCACGCCTCGCATTGCAAACCGTTTATTGCGTCGCGTTCGAGATTTTGCTGATGTGCGTAATGATGGC
ATTATTTCGGCAGACATTGCGAAACAAGCGCTTTCAATGTTAGATGTAGATGATGCAGGCTTTGATTACTTAGATAGAAA
ATTGCTTACCGCTGTGATTGAACGTTTTGATGGTGGGCCAGTTGGATTAGATAACTTAGCCGCTGCAATAGGTGAAGAAC
GAGATACTATCGAGGATGTTTTAGAACCTTATTTGATTCAACAGGGATTTTTACAACGTACGCCTCGAGGTCGAATTGCA
ACTTCGTTAACTTATCGACACTTCGGACTTCAGAAGCCGTCAGAATAA
ATGATCGAAGCAGATAGAATTATTAGCAGTCAGGCAAAGATGGATGAAGATGTCATCGATCGTGCGATTCGTCCAAAGCT
TTTAGCGGACTATGTGGGGCAGCCACAAGTGCGAGAGCAGATGGATATTTTCATTAAGGCGGCAAAATTGCGGCAAGATG
CCTTAGATCATCTTTTGATCTTCGGCCCTCCAGGTTTAGGAAAAACGACGCTAGCTAATATTGTCGCGAATGAAATGGGT
GTAAATATTCGCACAACATCGGGTCCTGTTCTTGAAAAAGCGGGAGATTTAGCGGCAATGCTGACAAATCTTGAACCCCA
TGATGTGTTGTTTATTGATGAAATTCACCGTCTTTCCCCTGCGATTGAAGAAGTGCTTTATCCAGCAATGGAAGATTATC
AGCTGGACATTATGATCGGCGAAGGCCCGGCCGCACGTTCGATTAAATTGGATTTACCACCTTTTACATTAATTGGTGCA
ACAACTCGAGCGGGTTCTTTAACTTCGCCACTACGTGATCGTTTTGGTATTGTTCAGCGTTTAGAATTTTATTCCGTTGA
AGATTTAACTTCTATTGTGACAAGAAGTGCCTCTTGCTTAAATCTAGAATTAGAAGATAAAGCGGCTTTTGAAGTGGCGC
GTCGTTCACGTGGCACGCCTCGCATTGCAAACCGTTTATTGCGTCGCGTTCGAGATTTTGCTGATGTGCGTAATGATGGC
ATTATTTCGGCAGACATTGCGAAACAAGCGCTTTCAATGTTAGATGTAGATGATGCAGGCTTTGATTACTTAGATAGAAA
ATTGCTTACCGCTGTGATTGAACGTTTTGATGGTGGGCCAGTTGGATTAGATAACTTAGCCGCTGCAATAGGTGAAGAAC
GAGATACTATCGAGGATGTTTTAGAACCTTATTTGATTCAACAGGGATTTTTACAACGTACGCCTCGAGGTCGAATTGCA
ACTTCGTTAACTTATCGACACTTCGGACTTCAGAAGCCGTCAGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
63.526 |
98.209 |
0.624 |
| ruvB | Streptococcus pneumoniae TIGR4 |
58.589 |
97.313 |
0.57 |
| ruvB | Streptococcus pneumoniae R6 |
58.589 |
97.313 |
0.57 |
| ruvB | Streptococcus pneumoniae D39 |
58.589 |
97.313 |
0.57 |
| ruvB | Helicobacter pylori 26695 |
55.921 |
90.746 |
0.507 |
| ruvB | Synechocystis sp. PCC 6803 |
53.994 |
93.433 |
0.504 |