Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   PARA_RS05520 Genome accession   NC_015964
Coordinates   1098109..1098720 (+) Length   203 a.a.
NCBI ID   WP_014064905.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae T3T1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1093109..1103720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PARA_RS05490 - 1093647..1094027 (+) 381 WP_041918229.1 hypothetical protein -
  PARA_RS05495 (PARA_10850) - 1094359..1095627 (+) 1269 WP_014064903.1 NRAMP family divalent metal transporter -
  PARA_RS05500 (PARA_10860) nudB 1095738..1096187 (+) 450 WP_014064904.1 dihydroneopterin triphosphate diphosphatase -
  PARA_RS05505 (PARA_10870) - 1096235..1096975 (+) 741 WP_005696686.1 YebC/PmpR family DNA-binding transcriptional regulator -
  PARA_RS05510 (PARA_10880) - 1096993..1097427 (+) 435 WP_005696685.1 hypothetical protein -
  PARA_RS05515 (PARA_10890) ruvC 1097478..1098050 (+) 573 WP_005697069.1 crossover junction endodeoxyribonuclease RuvC -
  PARA_RS05520 (PARA_10900) ruvA 1098109..1098720 (+) 612 WP_014064905.1 Holliday junction branch migration protein RuvA Machinery gene
  PARA_RS05525 (PARA_10910) ruvB 1098734..1099741 (+) 1008 WP_041918230.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  PARA_RS05530 (PARA_10920) - 1099797..1100108 (-) 312 WP_014064907.1 DUF5339 domain-containing protein -
  PARA_RS05535 (PARA_10930) - 1100567..1102132 (+) 1566 WP_014064908.1 cytochrome ubiquinol oxidase subunit I -
  PARA_RS05540 (PARA_10940) cydB 1102147..1103286 (+) 1140 WP_014064909.1 cytochrome d ubiquinol oxidase subunit II -
  PARA_RS10370 - 1103298..1103396 (+) 99 WP_101494276.1 cytochrome bd oxidase small subunit, CydX/CbdX family -
  PARA_RS05545 (PARA_10950) ybgE 1103399..1103686 (+) 288 WP_014064910.1 cyd operon protein YbgE -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22496.27 Da        Isoelectric Point: 6.7414

>NTDB_id=34396 PARA_RS05520 WP_014064905.1 1098109..1098720(+) (ruvA) [Haemophilus parainfluenzae T3T1]
MIGRLKGILLEKQPPEILLDVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLLFGFAQKTDRTLFRELIKTNG
VGPKLALAILSAMSVDQFAYAIEREELSKLVKIPGVGKKTAERLLVELKGKFKDVRQSDFFVESKHIPSTSELRQAESSA
DEAIAALIALGYKPTDAEKMVKKVAKADLSSEQLIREALKAAL

Nucleotide


Download         Length: 612 bp        

>NTDB_id=34396 PARA_RS05520 WP_014064905.1 1098109..1098720(+) (ruvA) [Haemophilus parainfluenzae T3T1]
ATGATCGGTCGTTTAAAAGGCATCTTATTAGAAAAACAACCTCCTGAAATTTTGCTTGATGTACAAGGCGTCGGTTACGA
ATTATTGTTACCAATGACCAGTTTTTATGACTTACCTGAAATCGGGCAAGAAACCACATTATTTACTCATCTTGTTGTGC
GTGAAGATGCTCATCTTCTTTTTGGATTTGCCCAAAAAACTGACCGCACTTTATTCCGTGAATTAATTAAAACCAATGGT
GTTGGTCCTAAATTGGCACTCGCGATTTTATCTGCAATGTCAGTAGATCAGTTTGCTTATGCTATTGAACGAGAAGAACT
GTCAAAATTAGTTAAAATTCCTGGTGTGGGCAAGAAAACGGCCGAACGTTTATTAGTAGAGTTAAAAGGGAAGTTTAAGG
ATGTTCGCCAAAGTGATTTCTTCGTGGAGAGCAAACACATTCCTTCAACTTCAGAATTACGTCAAGCTGAAAGCTCAGCT
GATGAAGCGATTGCTGCATTGATTGCGTTAGGTTATAAACCAACCGACGCTGAAAAAATGGTGAAAAAAGTGGCTAAAGC
GGATTTAAGTAGTGAGCAATTAATTCGCGAAGCCTTAAAAGCCGCATTATAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(160-201)

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

37.441

100

0.389

Multiple sequence alignment