Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EPB54_RS15410 Genome accession   NZ_CP035701
Coordinates   3058291..3058821 (-) Length   176 a.a.
NCBI ID   WP_005466625.1    Uniprot ID   Q87LA3
Organism   Vibrio parahaemolyticus strain 2012AW-0154     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3053291..3063821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB54_RS15390 - 3053602..3053931 (-) 330 WP_062905567.1 hypothetical protein -
  EPB54_RS15395 gspM 3053924..3054574 (-) 651 WP_005497276.1 type II secretion system protein GspM -
  EPB54_RS15400 - 3054571..3056016 (-) 1446 WP_005481017.1 MSHA biogenesis protein MshI -
  EPB54_RS15405 csrD 3056028..3058037 (-) 2010 WP_029837280.1 RNase E specificity factor CsrD -
  EPB54_RS15410 ssb 3058291..3058821 (-) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  EPB54_RS15415 qstR 3059100..3059744 (+) 645 WP_005480993.1 LuxR C-terminal-related transcriptional regulator Regulator
  EPB54_RS15420 galU 3060002..3060874 (+) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19563.62 Da        Isoelectric Point: 4.9269

>NTDB_id=343969 EPB54_RS15410 WP_005466625.1 3058291..3058821(-) (ssb) [Vibrio parahaemolyticus strain 2012AW-0154]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQPQ
QQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=343969 EPB54_RS15410 WP_005466625.1 3058291..3058821(-) (ssb) [Vibrio parahaemolyticus strain 2012AW-0154]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCGGTAGCAAACATCACGATTGCTACTTCTGAGTCATGGCGTGACAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTGTTCGGTAAGTTGGCAGAAGTTGCTGGTGAATACCTGCGTAAAGGTTCACAAGTTTACGTT
GAAGGCCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGATCGCTACTCAACAGAAGTTGTGGTCCAAGGTTT
TAATGGCGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCTCCTGCAATGGGCGGTCAACAACAGCAGCAAGGCG
GTTGGGGTCAACCTCAACAACCGGCTCAGCAGCAATACAATGCACCTCAACAGCAGCAACAGGCTCCGCAGCAACCACAG
CAGCAATACAACGAGCCACCAATGGATTTTGATGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LA3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.006

100

0.824
  ssb Glaesserella parasuis strain SC1401

57.143

100

0.614
  ssb Neisseria meningitidis MC58

48.023

100

0.483
  ssb Neisseria gonorrhoeae MS11

48.023

100

0.483

Multiple sequence alignment