Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   EPB54_RS15415 Genome accession   NZ_CP035701
Coordinates   3059100..3059744 (+) Length   214 a.a.
NCBI ID   WP_005480993.1    Uniprot ID   Q87LA2
Organism   Vibrio parahaemolyticus strain 2012AW-0154     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3054100..3064744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB54_RS15400 - 3054571..3056016 (-) 1446 WP_005481017.1 MSHA biogenesis protein MshI -
  EPB54_RS15405 csrD 3056028..3058037 (-) 2010 WP_029837280.1 RNase E specificity factor CsrD -
  EPB54_RS15410 ssb 3058291..3058821 (-) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  EPB54_RS15415 qstR 3059100..3059744 (+) 645 WP_005480993.1 LuxR C-terminal-related transcriptional regulator Regulator
  EPB54_RS15420 galU 3060002..3060874 (+) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  EPB54_RS15425 uvrA 3061012..3063834 (+) 2823 WP_083155421.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24386.20 Da        Isoelectric Point: 8.7760

>NTDB_id=343970 EPB54_RS15415 WP_005480993.1 3059100..3059744(+) (qstR) [Vibrio parahaemolyticus strain 2012AW-0154]
MRKSAYARKLFLISMEDDAAQKVASLEKYIDMSIPVISTDALMEAKPEHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLAFGQLKGLFYSEDSLEQVGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=343970 EPB54_RS15415 WP_005480993.1 3059100..3059744(+) (qstR) [Vibrio parahaemolyticus strain 2012AW-0154]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATTAGTATGGAAGACGATGCTGCGCAGAAAGTCGCATCATTAGA
AAAGTACATCGATATGAGCATTCCTGTAATCTCAACCGATGCCCTAATGGAAGCGAAACCCGAACATCGAAATAAAATTC
TACTCATTGACTTCAGTGAACATAAATCACTCGTTCAATCGATTAAAAACCTGCCATTGGTTTGGAAGAACTTTGAGACG
GTCGTGTTCAACGTTCCAAAACGCCTCACTACGGATGAACTGCTCGCCTTCGGCCAATTAAAAGGCTTGTTTTACAGCGA
AGATTCTTTAGAACAAGTAGGCGAAGGACTGAAAGGCATTGTCAACGGGCAAAACTGGCTACCACGCAACGTAACCAGCC
AACTGCTGCACTATTATCGAAATGTGATAAATACTCACACCGCGCCAGCAACCGTCGATCTCACCATTCGCGAACTGCAA
GTGCTGCGTTGTCTGCAAGCCGGGGCATCGAATAGCCAGATGGCAGAAGAACTGTTTGTTAGCGAATTTACGATCAAGTC
GCACCTGTATCAGATCTTTAAAAAGCTCTCAGTGAAAAACCGAGTTCAAGCCATTGCTTGGGCCGATCAAAACTTGATGT
CTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LA2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  qstR Vibrio campbellii strain DS40M4

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

52.093

100

0.523

Multiple sequence alignment