Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EPB57_RS17925 Genome accession   NZ_CP035700
Coordinates   2073620..2075143 (+) Length   507 a.a.
NCBI ID   WP_154204939.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain 2013V-1302     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2068620..2080143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB57_RS17910 ilvE 2070261..2071199 (-) 939 WP_005378953.1 branched-chain-amino-acid transaminase -
  EPB57_RS17915 ilvM 2071212..2071496 (-) 285 WP_005378958.1 acetolactate synthase 2 small subunit -
  EPB57_RS17920 ilvG 2071508..2073154 (-) 1647 WP_005378960.1 acetolactate synthase 2 catalytic subunit -
  EPB57_RS17925 comM 2073620..2075143 (+) 1524 WP_154204939.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EPB57_RS17930 - 2075202..2076158 (-) 957 WP_005379034.1 DUF2860 domain-containing protein -
  EPB57_RS17935 - 2076308..2077186 (+) 879 WP_064368872.1 acyltransferase -
  EPB57_RS17940 - 2077233..2077835 (-) 603 WP_005379036.1 thiol:disulfide interchange protein DsbA/DsbL -
  EPB57_RS17945 - 2077870..2078856 (-) 987 WP_005379037.1 serine/threonine protein kinase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54988.01 Da        Isoelectric Point: 8.5016

>NTDB_id=343917 EPB57_RS17925 WP_154204939.1 2073620..2075143(+) (comM) [Vibrio alginolyticus strain 2013V-1302]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDKLKNYEFVGELALSGGLRPVKGVLPAALEASKIQRHLVVPHVNGDQAALVGKEQHKSAQSL
LEVCAELCGQHRLNLFQTPQRKTIEKHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASVASLTQSEINEHNWKSRPFRSPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLAEGGDR
GEPTAIVKARVSHARNNMLNRSGKVNALLGSREIEAFCPLHKSDAEFLETALHHLGLSIRAYHRIIKVARTIADLDGAEQ
IERTHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=343917 EPB57_RS17925 WP_154204939.1 2073620..2075143(+) (comM) [Vibrio alginolyticus strain 2013V-1302]
ATGGGGCTGGCAATCATTCATAGTCGAGCAAGCGTCGGGGTGCAAGCGCCATCGGTTAGTGTAGAAGTTCATATCAGCAA
CGGCATGCCAGGGTTTACCTTAGTAGGCTTGCCAGAGACAACGGTAAAAGAGTCCAAAGATCGCGTACGCAGTGCGATCA
TTAATTCTAACTTTCAATTTCCTGCTAAGCGGATCACCGTGAACTTGGCTCCGGCAGATCTACCCAAGGAGGGAGGACGT
TTTGATCTTCCTATAGCATTGGGGATTTTGGCCGCTTCGGAGCAAATCGCGACAGATAAGCTAAAAAACTACGAATTTGT
GGGTGAGTTAGCACTATCTGGTGGTCTGAGACCTGTAAAAGGTGTGCTGCCTGCTGCGCTGGAAGCCAGTAAGATTCAAC
GTCATTTGGTCGTCCCACATGTGAATGGCGATCAGGCGGCGCTGGTGGGGAAGGAACAACATAAATCGGCCCAATCATTA
CTGGAAGTATGTGCCGAGCTTTGTGGTCAACATCGACTGAATCTTTTTCAAACGCCTCAGCGAAAAACGATCGAAAAACA
TGGTCGAGACTTACAAGATATTATTGGCCAACAACAAGGTAAGCGAGCACTGGAGATTGCTGCTGCTGGAAACCACAACT
TACTTTTCCTTGGCCCGCCAGGTACTGGAAAAACGATGTTGGCTTCGCGTTTGTGTGACTTATTACCGGAAATGAGTGAC
GAAGAAGCAATGGAAACCGCTTCGGTGGCATCGTTGACTCAGAGTGAAATTAATGAGCATAACTGGAAGTCGCGTCCGTT
TCGTTCTCCGCATCATTCAAGTTCAATGGCGGCATTAGTCGGCGGTGGTTCGGTACCCAGGCCAGGGGAGATCTCTTTAG
CCCACAACGGGTTATTGTTTCTCGATGAAATGCCCGAATTTGATCGTAAAGTTCTAGACTCGTTACGCGAACCGCTCGAA
TCTGGCGAGATCATTATCTCTCGAGCGCAAGGTAAAACACGCTTTCCGGCTCGCTTCCAATTAGTTGGAGCCTTGAACCC
AAGCCCGACAGGATATTACGAAGGCAATCAAGCGCGCACCAATCCACAAGCTATTTTGCGCTACCTTGGTCGATTATCTG
GACCACTGTTAGATCGCTTTGATATGTCTTTAGAAATCCCAGCTTTGCCCAAAGGGACATTAGCAGAAGGAGGTGATCGC
GGTGAGCCGACTGCTATCGTAAAAGCGCGTGTGAGCCATGCGCGTAACAATATGCTAAACCGCAGTGGTAAGGTCAATGC
ACTGTTAGGTAGTCGAGAAATTGAGGCGTTTTGTCCCTTGCATAAGAGTGATGCTGAGTTTCTTGAAACCGCTTTGCATC
ATTTAGGGCTCTCGATTCGTGCGTATCATCGTATTATCAAAGTGGCGCGAACAATCGCCGATCTGGATGGGGCGGAGCAA
ATTGAACGAACGCACTTGGCTGAAGCACTTGGGTATCGAGCGATGGACCGTTTGCTGAAACAGCTTACGGCGCAAGCGGT
ATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

94.083

100

0.941
  comM Vibrio cholerae strain A1552

84.813

100

0.848
  comM Haemophilus influenzae Rd KW20

65.286

100

0.653
  comM Glaesserella parasuis strain SC1401

64.314

100

0.647
  comM Legionella pneumophila str. Paris

48.992

97.83

0.479
  comM Legionella pneumophila strain ERS1305867

48.992

97.83

0.479
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.478

99.803

0.434

Multiple sequence alignment