Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ET948_RS02640 Genome accession   NZ_CP035697
Coordinates   560593..561117 (-) Length   174 a.a.
NCBI ID   WP_154114917.1    Uniprot ID   -
Organism   Vibrio cincinnatiensis strain 2409-02     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 555593..566117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ET948_RS02620 - 556013..556297 (-) 285 WP_115174067.1 MSHA biogenesis protein MshK -
  ET948_RS02625 gspM 556314..556967 (-) 654 WP_078926608.1 type II secretion system protein GspM -
  ET948_RS02630 - 556967..558412 (-) 1446 WP_154114915.1 MSHA biogenesis protein MshI -
  ET948_RS02635 csrD 558419..560413 (-) 1995 WP_154114916.1 RNase E specificity factor CsrD -
  ET948_RS02640 ssb 560593..561117 (-) 525 WP_154114917.1 single-stranded DNA-binding protein Machinery gene
  ET948_RS02645 qstR 561404..562054 (+) 651 WP_078926475.1 LuxR C-terminal-related transcriptional regulator Regulator
  ET948_RS02650 galU 562295..563164 (+) 870 WP_154114918.1 UTP--glucose-1-phosphate uridylyltransferase GalU -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19392.36 Da        Isoelectric Point: 5.2581

>NTDB_id=343860 ET948_RS02640 WP_154114917.1 560593..561117(-) (ssb) [Vibrio cincinnatiensis strain 2409-02]
MATRGVNKVILIGNLGQDPEVRYMPSGDAMVNLTVATSETWRDKATGEQREKTEWHRVSVFGKTAEFIGEYAKKGTQVYI
DGQLQTRKWQDQQGQERYTTEVVVRWPTGEAQILGSRGQQSGSPAQGGMNQGQQSNWGQPQQPAAHSSRPPQQPAASQPQ
YNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=343860 ET948_RS02640 WP_154114917.1 560593..561117(-) (ssb) [Vibrio cincinnatiensis strain 2409-02]
ATGGCAACCCGTGGTGTGAACAAAGTTATCTTGATCGGCAACTTAGGCCAAGATCCAGAGGTTCGCTATATGCCGAGTGG
CGATGCGATGGTCAACTTGACGGTGGCAACTTCAGAAACTTGGCGTGATAAAGCGACCGGCGAACAACGTGAAAAAACAG
AATGGCATCGTGTCTCTGTATTTGGTAAAACCGCTGAATTTATTGGTGAATATGCCAAAAAAGGCACACAAGTCTATATT
GATGGACAACTACAAACTCGTAAATGGCAAGACCAGCAAGGCCAAGAGAGATACACCACTGAGGTTGTCGTTCGTTGGCC
AACAGGTGAAGCTCAGATCTTAGGCAGTCGAGGTCAACAAAGTGGTTCTCCAGCACAAGGTGGCATGAATCAAGGTCAAC
AAAGTAACTGGGGACAGCCACAGCAGCCGGCGGCTCATTCTTCTCGACCACCGCAACAGCCTGCGGCTTCTCAGCCTCAA
TACAATGAACCACCAATGGATTTTGACGACGACATCCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.596

100

0.753
  ssb Glaesserella parasuis strain SC1401

51.892

100

0.552
  ssb Neisseria gonorrhoeae MS11

46.328

100

0.471
  ssb Neisseria meningitidis MC58

45.763

100

0.466

Multiple sequence alignment