Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   ET948_RS02645 Genome accession   NZ_CP035697
Coordinates   561404..562054 (+) Length   216 a.a.
NCBI ID   WP_078926475.1    Uniprot ID   A0A1T4QER8
Organism   Vibrio cincinnatiensis strain 2409-02     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 556404..567054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ET948_RS02630 - 556967..558412 (-) 1446 WP_154114915.1 MSHA biogenesis protein MshI -
  ET948_RS02635 csrD 558419..560413 (-) 1995 WP_154114916.1 RNase E specificity factor CsrD -
  ET948_RS02640 ssb 560593..561117 (-) 525 WP_154114917.1 single-stranded DNA-binding protein Machinery gene
  ET948_RS02645 qstR 561404..562054 (+) 651 WP_078926475.1 LuxR C-terminal-related transcriptional regulator Regulator
  ET948_RS02650 galU 562295..563164 (+) 870 WP_154114918.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  ET948_RS02655 uvrA 563299..566124 (+) 2826 WP_154114919.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25166.13 Da        Isoelectric Point: 9.9102

>NTDB_id=343861 ET948_RS02645 WP_078926475.1 561404..562054(+) (qstR) [Vibrio cincinnatiensis strain 2409-02]
MPRSNYTRTIYYLTLDEKAATPKILSQAIEQLAIPIPKIEPEQLVNLYQHSKHKILLFDFQEHEQIRQRLAPLKLTSSHL
EIILFNVDKRLHTDTLLSFGHLKGVFYQTETSANLTNGLAEIINGQNWLPRHVSNQLLHYYRYIFQEHQIKATINLTARE
LQILRCLQTGASNMLIAESLFISEFTVKSHLYQIFKKISVKNRTQAIAWANQRILS

Nucleotide


Download         Length: 651 bp        

>NTDB_id=343861 ET948_RS02645 WP_078926475.1 561404..562054(+) (qstR) [Vibrio cincinnatiensis strain 2409-02]
ATGCCAAGATCAAATTATACAAGAACCATCTACTACCTTACTTTAGATGAGAAAGCCGCTACCCCAAAGATTCTCAGTCA
AGCAATAGAACAACTTGCTATCCCTATTCCAAAAATTGAACCAGAACAACTCGTCAATCTTTATCAGCACTCAAAACACA
AAATTTTACTCTTTGATTTTCAGGAACACGAACAAATTCGGCAACGTCTTGCTCCCTTAAAACTAACGAGTTCACATCTG
GAAATCATTCTATTTAATGTAGATAAACGTTTACATACAGATACGTTGTTAAGTTTTGGCCATCTGAAAGGCGTTTTTTA
TCAAACAGAAACGTCAGCTAACTTAACAAATGGGCTAGCAGAAATTATCAATGGGCAAAATTGGTTGCCACGCCATGTCT
CTAACCAATTGTTACACTATTACCGTTACATTTTTCAAGAGCATCAAATTAAAGCAACGATTAATCTAACCGCAAGAGAA
CTTCAGATTTTACGCTGCTTACAAACAGGGGCCTCCAATATGCTCATTGCAGAAAGCTTATTCATTAGCGAATTTACGGT
AAAATCCCACCTATACCAAATATTTAAGAAAATATCGGTTAAAAACCGAACCCAAGCAATTGCGTGGGCTAATCAACGTA
TCTTGTCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1T4QER8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

67.907

99.537

0.676
  qstR Vibrio campbellii strain DS40M4

51.152

100

0.514
  qstR Vibrio parahaemolyticus RIMD 2210633

50.691

100

0.509

Multiple sequence alignment