Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | EPB61_RS15430 | Genome accession | NZ_CP035696 |
| Coordinates | 1682073..1682606 (+) | Length | 177 a.a. |
| NCBI ID | WP_014205867.1 | Uniprot ID | A0A0Q2XSJ5 |
| Organism | Vibrio furnissii strain 2419-04 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1677073..1687606
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EPB61_RS15415 | uvrA | 1677183..1680004 (-) | 2822 | Protein_1488 | excinuclease ABC subunit UvrA | - |
| EPB61_RS15420 | galU | 1680142..1681011 (-) | 870 | WP_172561867.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| EPB61_RS15425 | qstR | 1681140..1681790 (-) | 651 | WP_014205868.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| EPB61_RS15430 | ssb | 1682073..1682606 (+) | 534 | WP_014205867.1 | single-stranded DNA-binding protein | Machinery gene |
| EPB61_RS15435 | csrD | 1682742..1684736 (+) | 1995 | WP_154180668.1 | RNase E specificity factor CsrD | - |
| EPB61_RS15440 | - | 1684744..1686189 (+) | 1446 | WP_154180670.1 | MSHA biogenesis protein MshI | - |
| EPB61_RS15445 | gspM | 1686189..1686839 (+) | 651 | WP_004724077.1 | type II secretion system protein GspM | - |
| EPB61_RS15450 | - | 1686832..1687143 (+) | 312 | WP_004724074.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 177 a.a. Molecular weight: 19671.81 Da Isoelectric Point: 5.7626
>NTDB_id=343832 EPB61_RS15430 WP_014205867.1 1682073..1682606(+) (ssb) [Vibrio furnissii strain 2419-04]
MASRGVNKVILVGNLGSDPEVRYMPSGGAVANITVATSETWRDKATGEQREKTEWHRVALYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGTMQMLGGRQQGGMPAQGGGMNQQQQQGGWGQPQQPAMQQHKPMQQQAPQQS
QPQYNEPPMDFDDDIPF
MASRGVNKVILVGNLGSDPEVRYMPSGGAVANITVATSETWRDKATGEQREKTEWHRVALYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGTMQMLGGRQQGGMPAQGGGMNQQQQQGGWGQPQQPAMQQHKPMQQQAPQQS
QPQYNEPPMDFDDDIPF
Nucleotide
Download Length: 534 bp
>NTDB_id=343832 EPB61_RS15430 WP_014205867.1 1682073..1682606(+) (ssb) [Vibrio furnissii strain 2419-04]
ATGGCAAGCCGTGGCGTGAATAAAGTAATTTTGGTTGGCAACCTTGGTAGTGATCCGGAAGTTCGCTACATGCCAAGTGG
TGGTGCAGTCGCAAACATCACTGTAGCCACGTCAGAAACATGGCGTGATAAAGCAACTGGCGAACAGCGCGAGAAAACAG
AGTGGCACCGTGTTGCTCTGTACGGAAAACTGGCGGAAGTCGCGGGTGAATATCTACGCAAAGGTTCTCAGGTCTACATC
GAAGGTCAACTGCAAACACGTAAGTGGCAGGACCAAAGTGGTCAAGACCGTTACTCAACCGAAGTGGTTGTGCAAGGTTA
CAACGGCACAATGCAGATGTTGGGTGGCCGTCAACAAGGCGGTATGCCAGCACAGGGCGGTGGCATGAACCAACAGCAAC
AACAAGGCGGTTGGGGTCAGCCTCAGCAACCCGCGATGCAGCAGCATAAACCGATGCAGCAGCAAGCACCTCAGCAATCT
CAGCCTCAGTACAATGAACCGCCAATGGATTTTGATGACGATATCCCATTCTAA
ATGGCAAGCCGTGGCGTGAATAAAGTAATTTTGGTTGGCAACCTTGGTAGTGATCCGGAAGTTCGCTACATGCCAAGTGG
TGGTGCAGTCGCAAACATCACTGTAGCCACGTCAGAAACATGGCGTGATAAAGCAACTGGCGAACAGCGCGAGAAAACAG
AGTGGCACCGTGTTGCTCTGTACGGAAAACTGGCGGAAGTCGCGGGTGAATATCTACGCAAAGGTTCTCAGGTCTACATC
GAAGGTCAACTGCAAACACGTAAGTGGCAGGACCAAAGTGGTCAAGACCGTTACTCAACCGAAGTGGTTGTGCAAGGTTA
CAACGGCACAATGCAGATGTTGGGTGGCCGTCAACAAGGCGGTATGCCAGCACAGGGCGGTGGCATGAACCAACAGCAAC
AACAAGGCGGTTGGGGTCAGCCTCAGCAACCCGCGATGCAGCAGCATAAACCGATGCAGCAGCAAGCACCTCAGCAATCT
CAGCCTCAGTACAATGAACCGCCAATGGATTTTGATGACGATATCCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
90.503 |
100 |
0.915 |
| ssb | Glaesserella parasuis strain SC1401 |
54.098 |
100 |
0.559 |
| ssb | Neisseria meningitidis MC58 |
48.023 |
100 |
0.48 |
| ssb | Neisseria gonorrhoeae MS11 |
48.023 |
100 |
0.48 |