Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   EPB61_RS15425 Genome accession   NZ_CP035696
Coordinates   1681140..1681790 (-) Length   216 a.a.
NCBI ID   WP_014205868.1    Uniprot ID   -
Organism   Vibrio furnissii strain 2419-04     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1676140..1686790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB61_RS15415 uvrA 1677183..1680004 (-) 2822 Protein_1488 excinuclease ABC subunit UvrA -
  EPB61_RS15420 galU 1680142..1681011 (-) 870 WP_172561867.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  EPB61_RS15425 qstR 1681140..1681790 (-) 651 WP_014205868.1 LuxR C-terminal-related transcriptional regulator Regulator
  EPB61_RS15430 ssb 1682073..1682606 (+) 534 WP_014205867.1 single-stranded DNA-binding protein Machinery gene
  EPB61_RS15435 csrD 1682742..1684736 (+) 1995 WP_154180668.1 RNase E specificity factor CsrD -
  EPB61_RS15440 - 1684744..1686189 (+) 1446 WP_154180670.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24779.49 Da        Isoelectric Point: 8.7565

>NTDB_id=343831 EPB61_RS15425 WP_014205868.1 1681140..1681790(-) (qstR) [Vibrio furnissii strain 2419-04]
MQRANYARTIYYLCLDATLPPPPPLGDALTRLALPVPQIEPEQLLQAYQADKHKILLFNYGEHDAIRQRLGPLPITSPHL
ETILFGVEKRLRTEELLTFGNLKGLFYQDDAPSSIAQGLAEIINGQNWLPRHVSSQLLHYYRHIFQHHHTQATIELTTRE
LQILRSLQTGASNMQMAESLFISEFTVKSHLYQIFKKLSVKNRTQAITWANQNLLS

Nucleotide


Download         Length: 651 bp        

>NTDB_id=343831 EPB61_RS15425 WP_014205868.1 1681140..1681790(-) (qstR) [Vibrio furnissii strain 2419-04]
ATGCAACGCGCCAATTACGCCCGAACGATTTACTATTTGTGTCTGGATGCCACCCTCCCTCCGCCACCCCCATTGGGTGA
CGCACTCACACGACTCGCCCTGCCTGTGCCACAGATTGAACCCGAACAACTGTTGCAAGCGTATCAAGCCGACAAACATA
AAATCCTACTGTTTAATTATGGTGAACATGACGCGATTCGCCAGCGTTTAGGCCCCTTGCCCATCACCAGCCCCCACTTG
GAAACCATTTTATTTGGTGTAGAAAAACGCCTGCGCACGGAAGAACTTCTCACCTTTGGCAACCTGAAAGGCTTGTTTTA
TCAAGATGACGCGCCCTCATCGATCGCGCAGGGATTGGCGGAAATCATCAACGGTCAGAATTGGCTGCCACGCCATGTCA
GCAGTCAGTTGTTGCATTACTATCGCCACATTTTCCAGCATCATCACACGCAAGCAACCATCGAGCTCACCACACGTGAA
TTACAAATCCTACGCAGCTTGCAGACGGGCGCCTCAAACATGCAGATGGCGGAGAGCCTGTTCATCAGTGAATTTACCGT
CAAGTCGCACCTCTATCAGATCTTTAAAAAGCTCTCGGTCAAGAACCGAACCCAAGCCATCACATGGGCCAACCAAAACC
TGCTCTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

70.968

100

0.713
  qstR Vibrio parahaemolyticus RIMD 2210633

50.224

100

0.519
  qstR Vibrio campbellii strain DS40M4

51.389

100

0.514

Multiple sequence alignment