Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EWA65_RS11790 Genome accession   NZ_CP035688
Coordinates   2572073..2573599 (-) Length   508 a.a.
NCBI ID   WP_055028233.1    Uniprot ID   A0A0Q0TFU7
Organism   Vibrio metoecus strain 08-2459     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2567073..2578599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EWA65_RS11765 - 2567402..2567668 (+) 267 WP_000649656.1 YihD family protein -
  EWA65_RS11770 ccoG 2567930..2569354 (+) 1425 WP_000076157.1 cytochrome c oxidase accessory protein CcoG -
  EWA65_RS11775 - 2569402..2570388 (+) 987 WP_154139119.1 serine/threonine protein kinase -
  EWA65_RS11780 - 2570420..2571025 (+) 606 WP_055028232.1 thiol:disulfide interchange protein DsbA/DsbL -
  EWA65_RS11785 - 2571099..2571983 (-) 885 WP_000881893.1 acyltransferase -
  EWA65_RS11790 comM 2572073..2573599 (-) 1527 WP_055028233.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EWA65_RS11795 ilvG 2574132..2575778 (+) 1647 WP_055028234.1 acetolactate synthase 2 catalytic subunit -
  EWA65_RS11800 ilvM 2575790..2576074 (+) 285 WP_001190201.1 acetolactate synthase 2 small subunit -
  EWA65_RS11805 ilvE 2576086..2577024 (+) 939 WP_000201999.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55216.29 Da        Isoelectric Point: 8.2715

>NTDB_id=343712 EWA65_RS11790 WP_055028233.1 2572073..2573599(-) (comM) [Vibrio metoecus strain 08-2459]
MGLAIIHSRASIGVQAPPVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASDQIARTKLENYEFIGELALSGEIRGVKGVLPAALAANQVHRCLVVPHCNGDQAALVGSERHKSAQSL
LEVCADLCGQQNLSLFQSSPSVQEVSSHTRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMS
DEEAMETASIASLTQQEINQHNWKLRPFRSPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPL
ESGEIVISRAQGKTRFPARFQLVGALNPSPTGYYEGSQARANPQSILRYLSRLSGPLLDRFDMSIEIPALPKGTLANGGD
RGESTAAVRQRVLLARTRMLERSGKVNALLQSREIEQYCPLLKADAEFLESALHRLGLSIRAYHRIIKVARTIADLQGEA
QIARPHLAEALGYRSMDRLLKQLSAQNV

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=343712 EWA65_RS11790 WP_055028233.1 2572073..2573599(-) (comM) [Vibrio metoecus strain 08-2459]
ATGGGACTTGCGATCATTCACAGCCGCGCCAGTATTGGTGTGCAGGCACCTCCGGTCACGGTTGAGGTTCACATCAGTAA
TGGAATGCCGGGGTTTACCTTAGTTGGGTTGCCGGAAACCACAGTAAAAGAGTCACGCGATCGAGTGCGTAGCGCAATCA
TCAATTCTCGATTTGAGTTTCCGGCGAAACGCATTACGGTCAACTTAGCCCCTGCTGATCTGCCTAAAGAGGGAGGGCGT
TTCGATCTTCCGATAGCACTCGGTATTTTGGCGGCCTCGGATCAAATTGCGCGAACTAAGCTGGAAAATTACGAATTTAT
TGGTGAACTGGCGCTATCGGGTGAAATTCGTGGTGTGAAAGGGGTGTTGCCTGCCGCGCTCGCGGCTAATCAAGTCCATC
GCTGTTTAGTGGTGCCACACTGTAATGGTGATCAGGCGGCGTTAGTCGGGAGTGAGCGGCATAAATCGGCGCAAAGCTTA
TTGGAAGTATGTGCCGATTTGTGTGGCCAGCAGAACCTGTCATTGTTTCAAAGTTCGCCCAGTGTGCAGGAAGTGAGTAG
TCATACGCGCGATCTGCAAGACATCATTGGTCAACAGCAAGGCAAACGTGCGTTGGAAATTGCTGCAGCTGGCAATCACA
ACCTGCTGTTTCTCGGCCCTCCCGGGACGGGGAAAACCATGCTCGCTTCACGGCTGTGCGATTTACTGCCCGAAATGAGT
GACGAAGAGGCGATGGAGACGGCCTCGATTGCCTCTCTCACTCAGCAAGAAATTAATCAACACAACTGGAAGTTGCGCCC
TTTTCGTTCTCCACACCATTCAAGCTCAATGGCGGCTTTGGTCGGGGGCGGTACCATTCCGCGCCCCGGTGAAATTTCTC
TCGCCCATAATGGGTTGTTGTTTTTGGACGAAATGCCGGAGTTTGAGCGCAAAGTGTTGGATTCTCTGCGTGAACCGCTG
GAATCAGGCGAGATCGTGATTTCTCGTGCGCAGGGGAAAACCCGTTTTCCAGCACGCTTTCAATTAGTCGGCGCGTTAAA
TCCAAGCCCCACGGGTTATTACGAAGGCAGTCAGGCGCGTGCTAATCCACAGAGTATTTTGCGCTATTTGAGTCGGCTCT
CTGGCCCCTTGTTGGATCGCTTTGATATGTCGATAGAGATCCCTGCGTTACCCAAAGGCACGCTTGCCAATGGGGGCGAT
CGTGGTGAATCGACGGCCGCTGTGCGTCAACGGGTATTACTTGCTCGAACGCGAATGCTAGAACGGTCTGGCAAGGTGAA
TGCTTTACTGCAAAGCCGAGAAATTGAACAGTATTGCCCTTTGCTTAAAGCGGATGCGGAATTTTTGGAAAGTGCGCTGC
ACCGCTTGGGTTTATCGATTCGGGCTTACCATCGCATCATTAAAGTGGCGCGAACCATAGCGGACTTGCAAGGTGAAGCG
CAGATCGCTCGTCCACATTTGGCTGAGGCGTTGGGCTATCGCTCCATGGATCGCTTACTCAAACAACTCAGTGCGCAAAA
TGTCTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q0TFU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

97.047

100

0.97
  comM Vibrio campbellii strain DS40M4

85.039

100

0.85
  comM Haemophilus influenzae Rd KW20

67.061

99.803

0.669
  comM Glaesserella parasuis strain SC1401

63.953

100

0.65
  comM Legionella pneumophila str. Paris

50.503

97.835

0.494
  comM Legionella pneumophila strain ERS1305867

50.503

97.835

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.008

100

0.441

Multiple sequence alignment