Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EWA65_RS00235 Genome accession   NZ_CP035688
Coordinates   50493..51026 (+) Length   177 a.a.
NCBI ID   WP_000168293.1    Uniprot ID   A0A067BLG6
Organism   Vibrio metoecus strain 08-2459     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 45493..56026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EWA65_RS00220 uvrA 45536..48358 (-) 2823 WP_055028970.1 excinuclease ABC subunit UvrA -
  EWA65_RS00225 galU 48514..49386 (-) 873 WP_032469645.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  EWA65_RS00230 qstR 49557..50201 (-) 645 WP_055028230.1 LuxR C-terminal-related transcriptional regulator Regulator
  EWA65_RS00235 ssb 50493..51026 (+) 534 WP_000168293.1 single-stranded DNA-binding protein Machinery gene
  EWA65_RS00240 csrD 51150..53162 (+) 2013 WP_195707981.1 RNase E specificity factor CsrD -
  EWA65_RS00245 - 53176..54618 (+) 1443 WP_055028225.1 PilN domain-containing protein -
  EWA65_RS00250 gspM 54615..55265 (+) 651 WP_055028224.1 type II secretion system protein GspM -
  EWA65_RS00255 - 55279..55578 (+) 300 WP_081018414.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19715.93 Da        Isoelectric Point: 5.7626

>NTDB_id=343677 EWA65_RS00235 WP_000168293.1 50493..51026(+) (ssb) [Vibrio metoecus strain 08-2459]
MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKTTGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGIMQMLGGRTQQGGMPAQQGGMNAPQQGGWGQPQQPAKQHQPMQQSAPQQYA
QPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=343677 EWA65_RS00235 WP_000168293.1 50493..51026(+) (ssb) [Vibrio metoecus strain 08-2459]
ATGGCAAGCCGTGGCGTGAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGGCGCAGTAGCGAATATCACCATCGCGACCTCCGAAACTTGGCGTGACAAAACCACGGGTGAGCAGAAGGAAAAAACCG
AGTGGCACCGTGTGACGCTGTATGGAAAATTAGCCGAAGTGGCGGGTGAGTACCTACGTAAAGGTTCTCAAGTCTATATT
GAAGGTCAACTGCAAACACGTAAGTGGCAAGATCAAAGCGGTCAAGATCGTTATTCAACTGAAGTGGTTGTACAAGGTTA
CAATGGCATCATGCAGATGCTGGGTGGCCGTACTCAACAAGGTGGAATGCCTGCTCAGCAAGGCGGTATGAATGCACCAC
AGCAAGGTGGTTGGGGACAACCTCAGCAGCCAGCGAAGCAGCATCAGCCAATGCAACAATCGGCACCTCAACAGTATGCT
CAGCCGCAATACAACGAGCCACCAATGGATTTTGATGACGACATCCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A067BLG6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

96.067

100

0.966
  ssb Glaesserella parasuis strain SC1401

52.747

100

0.542
  ssb Neisseria meningitidis MC58

47.568

100

0.497
  ssb Neisseria gonorrhoeae MS11

47.486

100

0.48

Multiple sequence alignment