Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   EWA65_RS00230 Genome accession   NZ_CP035688
Coordinates   49557..50201 (-) Length   214 a.a.
NCBI ID   WP_055028230.1    Uniprot ID   A0A0N8UHI6
Organism   Vibrio metoecus strain 08-2459     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 44557..55201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EWA65_RS00220 uvrA 45536..48358 (-) 2823 WP_055028970.1 excinuclease ABC subunit UvrA -
  EWA65_RS00225 galU 48514..49386 (-) 873 WP_032469645.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  EWA65_RS00230 qstR 49557..50201 (-) 645 WP_055028230.1 LuxR C-terminal-related transcriptional regulator Regulator
  EWA65_RS00235 ssb 50493..51026 (+) 534 WP_000168293.1 single-stranded DNA-binding protein Machinery gene
  EWA65_RS00240 csrD 51150..53162 (+) 2013 WP_195707981.1 RNase E specificity factor CsrD -
  EWA65_RS00245 - 53176..54618 (+) 1443 WP_055028225.1 PilN domain-containing protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24871.76 Da        Isoelectric Point: 9.7353

>NTDB_id=343676 EWA65_RS00230 WP_055028230.1 49557..50201(-) (qstR) [Vibrio metoecus strain 08-2459]
MQRANYARTIYLLTTQPETLHPNIQAAITKLNLPVPIIEPERLLREYQSDKHKILLLDHSESNAIRHKLGPLKLTSPYFE
TILFNVEKRLKTEDLLTYGNLKGLFYANEETGFMAHGLGEIINGQNWLPRHVSNQLLHYYRYAFQTHQTQVTIDLTAREI
QILRCLQTGASNMQIAESLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQNLL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=343676 EWA65_RS00230 WP_055028230.1 49557..50201(-) (qstR) [Vibrio metoecus strain 08-2459]
ATGCAACGAGCCAACTACGCACGCACTATTTACTTACTCACAACTCAACCCGAAACTTTACATCCCAATATTCAGGCGGC
GATAACCAAACTCAATCTTCCAGTTCCGATCATTGAACCAGAACGCCTACTGCGCGAATACCAGTCTGATAAACATAAAA
TTTTACTGCTCGACCATAGTGAAAGTAACGCCATTCGCCACAAGTTAGGCCCTCTAAAACTCACCAGCCCATACTTCGAA
ACGATTTTATTCAATGTGGAAAAACGCTTAAAAACGGAAGATTTACTCACCTACGGGAATTTAAAAGGCTTGTTCTATGC
TAATGAAGAAACTGGCTTTATGGCACATGGATTAGGTGAAATCATTAATGGACAAAACTGGTTACCACGCCATGTAAGTA
ACCAACTGCTGCATTATTACCGCTATGCGTTTCAAACTCATCAAACACAAGTAACCATTGACCTCACCGCTCGTGAAATC
CAAATTTTACGCTGCTTACAAACGGGGGCTTCCAATATGCAAATCGCAGAGAGCTTGTTTATCAGTGAGTTCACAGTGAA
GTCGCACCTTTATCAGATATTTAAAAAGTTAAATGTAAAAAACAGAGTCAAAGCCATTGCTTGGGTAAATCAGAATTTAT
TGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0N8UHI6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

89.72

100

0.897
  qstR Vibrio campbellii strain DS40M4

50.467

100

0.505
  qstR Vibrio parahaemolyticus RIMD 2210633

49.767

100

0.5

Multiple sequence alignment