Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EPB59_RS12435 Genome accession   NZ_CP035686
Coordinates   2732308..2733831 (+) Length   507 a.a.
NCBI ID   WP_154173010.1    Uniprot ID   -
Organism   Vibrio metoecus strain 2011V-1169     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2727308..2738831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB59_RS12420 ilvE 2728884..2729822 (-) 939 WP_000212002.1 branched-chain-amino-acid transaminase -
  EPB59_RS12425 ilvM 2729834..2730118 (-) 285 WP_001190201.1 acetolactate synthase 2 small subunit -
  EPB59_RS12430 ilvG 2730130..2731776 (-) 1647 WP_154173008.1 acetolactate synthase 2 catalytic subunit -
  EPB59_RS12435 comM 2732308..2733831 (+) 1524 WP_154173010.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EPB59_RS12440 - 2733921..2734805 (+) 885 WP_154173012.1 acyltransferase -
  EPB59_RS12445 - 2734880..2735485 (-) 606 WP_055051983.1 thiol:disulfide interchange protein DsbA/DsbL -
  EPB59_RS12450 - 2735517..2736503 (-) 987 WP_055052000.1 serine/threonine protein kinase -
  EPB59_RS12455 ccoG 2736551..2737975 (-) 1425 WP_055051984.1 cytochrome c oxidase accessory protein CcoG -
  EPB59_RS12460 - 2738236..2738502 (-) 267 WP_000649656.1 DUF1040 family protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54955.15 Da        Isoelectric Point: 8.1938

>NTDB_id=343667 EPB59_RS12435 WP_154173010.1 2732308..2733831(+) (comM) [Vibrio metoecus strain 2011V-1169]
MGLAIIHSRASIGVQAPPVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASDQIARTKLESCEFIGELALSGEIRGVKGVLPAALAANQVHRCLVVPHCNGDQAALVGSERHKSAQSL
LEVCADLCGQQNLSLFQSAPSVLEIPTTRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASIASLTQQEINQHNWKLRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIVISRAQGKTRFPARFQLVGALNPSPTGYYEGSQARANPQSILRYLSRLSGPLLDRFDMSIEIPALPKGTLANGGDR
GESTAAVRQRVLAARERMLVRSGKVNSLLQSREIEQYCPLVKTDAEFLESALHRLGLSIRAYHRIIKVARTIADLQGEAQ
IARPHLAEALGYRAMDRLLKQLSAQNV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=343667 EPB59_RS12435 WP_154173010.1 2732308..2733831(+) (comM) [Vibrio metoecus strain 2011V-1169]
ATGGGACTTGCGATCATTCATAGCCGCGCCAGTATTGGCGTGCAGGCACCTCCGGTTACGGTTGAGGTTCACATCAGTAA
TGGAATGCCGGGGTTTACCTTAGTTGGGTTGCCGGAAACCACGGTAAAAGAGTCACGCGATCGAGTGCGTAGTGCGATCA
TTAATTCTCGGTTTGAGTTTCCAGCGAAACGCATTACGGTCAATTTAGCCCCTGCAGATCTGCCTAAAGAGGGAGGGCGT
TTTGATTTGCCGATTGCACTTGGCATTTTGGCAGCCTCGGATCAAATTGCGCGAACTAAGCTCGAAAGTTGCGAATTTAT
TGGTGAACTGGCGCTATCGGGTGAAATTCGTGGCGTGAAAGGGGTATTGCCTGCCGCACTCGCGGCTAATCAAGTCCATC
GCTGTTTAGTGGTGCCACACTGTAATGGCGATCAGGCGGCGTTAGTCGGGAGTGAGCGGCATAAATCTGCGCAAAGCTTA
TTGGAAGTATGTGCCGATCTGTGTGGACAGCAGAACCTGTCGTTATTTCAAAGTGCACCAAGTGTGTTGGAGATACCAAC
TACCCGCGATTTACAGGATATTATTGGTCAGCAACAGGGTAAGCGTGCGTTAGAAATCGCAGCGGCTGGCAATCACAACC
TGCTGTTTCTCGGCCCTCCTGGGACGGGTAAAACTATGCTCGCTTCACGGCTGTGCGATTTACTGCCAGAAATGAGTGAT
GAAGAGGCGATGGAAACAGCCTCTATTGCGTCCCTCACGCAGCAAGAGATTAACCAACACAACTGGAAGCTACGCCCTTT
TCGTGCGCCGCACCATTCAAGCTCAATGGCGGCTTTAGTCGGTGGCGGCACCATTCCGCGCCCCGGTGAAATCTCGCTTG
CCCATAATGGTCTGCTGTTTTTGGACGAAATGCCGGAGTTTGAGCGTAAAGTGTTGGATTCACTGCGTGAACCGTTGGAA
TCAGGCGAGATCGTGATTTCTCGCGCGCAGGGGAAAACCCGTTTTCCAGCACGCTTTCAATTAGTCGGCGCGTTAAATCC
AAGCCCCACGGGTTATTACGAGGGCAGTCAGGCGCGTGCCAATCCGCAGAGTATTTTGCGCTATTTGAGTCGGCTCTCTG
GCCCTTTGTTGGATCGCTTTGATATGTCGATAGAGATCCCTGCCTTACCGAAGGGCACCTTGGCCAATGGTGGTGATCGT
GGTGAATCGACTGCGGCTGTGCGCCAGCGAGTGTTGGCTGCTCGGGAGCGAATGCTTGTACGTTCTGGTAAGGTGAATTC
CTTGCTGCAAAGCCGAGAAATTGAACAATATTGTCCTTTGGTCAAAACTGATGCCGAATTTTTGGAAAGTGCGCTGCATC
GCTTGGGTTTATCGATTCGGGCTTACCACCGCATCATTAAAGTGGCGCGAACCATAGCGGATTTGCAAGGTGAAGCGCAG
ATCGCTCGTCCACATTTGGCCGAGGCGTTGGGCTATCGAGCCATGGACCGCTTACTCAAACAGCTCAGTGCGCAAAACGT
CTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

96.45

100

0.965
  comM Vibrio campbellii strain DS40M4

84.646

100

0.848
  comM Haemophilus influenzae Rd KW20

67.061

100

0.671
  comM Glaesserella parasuis strain SC1401

64.314

100

0.647
  comM Legionella pneumophila str. Paris

50.806

97.83

0.497
  comM Legionella pneumophila strain ERS1305867

50.806

97.83

0.497
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.11

100

0.432

Multiple sequence alignment