Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ET951_RS10335 Genome accession   NZ_CP035682
Coordinates   2197468..2197779 (+) Length   103 a.a.
NCBI ID   WP_154113409.1    Uniprot ID   -
Organism   Vibrio mimicus strain 2011V-1073     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2192468..2202779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ET951_RS10320 lon 2192503..2194872 (+) 2370 WP_154113407.1 endopeptidase La -
  ET951_RS10325 - 2195048..2195320 (+) 273 WP_001044516.1 HU family DNA-binding protein -
  ET951_RS10330 ppiD 2195473..2197332 (+) 1860 WP_154113408.1 peptidylprolyl isomerase -
  ET951_RS10335 comEA 2197468..2197779 (+) 312 WP_154113409.1 ComEA family DNA-binding protein Machinery gene
  ET951_RS10340 cmk 2197955..2198632 (+) 678 WP_000100580.1 (d)CMP kinase -
  ET951_RS10345 rpsA 2198741..2200411 (+) 1671 WP_000140311.1 30S ribosomal protein S1 -
  ET951_RS10350 ihfB 2200664..2200942 (+) 279 WP_000167340.1 integration host factor subunit beta -
  ET951_RS10355 - 2201087..2201368 (+) 282 WP_000691486.1 LapA family protein -
  ET951_RS10360 lapB 2201381..2202550 (+) 1170 WP_000889968.1 lipopolysaccharide assembly protein LapB -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 10997.83 Da        Isoelectric Point: 4.4982

>NTDB_id=343613 ET951_RS10335 WP_154113409.1 2197468..2197779(+) (comEA) [Vibrio mimicus strain 2011V-1073]
MQLKTTLMTVLLSLCLPAMPMLVSAEETNPTAQTEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFISI
DDLTNVKGIGEATVRNNATRILL

Nucleotide


Download         Length: 312 bp        

>NTDB_id=343613 ET951_RS10335 WP_154113409.1 2197468..2197779(+) (comEA) [Vibrio mimicus strain 2011V-1073]
ATGCAATTAAAAACAACACTTATGACAGTTCTGCTTTCACTCTGTTTACCAGCCATGCCTATGCTGGTTAGTGCTGAGGA
AACAAACCCGACTGCGCAAACTGAAGAAGGTATTGTCATTACTGTGAATATCAATACGGCTTCGGCAGAAGAGCTTGCCA
CTTTGCTAAAAGGTATCGGGCTTAAAAAAGCACAGGCGATTGTCGATTATCGTGAGGCTAATGGTCCTTTTATCAGCATC
GACGATCTGACGAATGTGAAAGGCATTGGTGAAGCAACCGTACGCAACAACGCGACTCGCATATTGCTGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(41-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

83.495

100

0.835
  comEA Vibrio cholerae strain A1552

83.495

100

0.835
  comEA Vibrio parahaemolyticus RIMD 2210633

62.5

93.204

0.583
  comEA Vibrio campbellii strain DS40M4

59.794

94.175

0.563
  comE1/comEA Haemophilus influenzae Rd KW20

39.13

100

0.437

Multiple sequence alignment