Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ET951_RS05580 Genome accession   NZ_CP035682
Coordinates   1201660..1203183 (+) Length   507 a.a.
NCBI ID   WP_154113094.1    Uniprot ID   -
Organism   Vibrio mimicus strain 2011V-1073     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1196660..1208183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ET951_RS05565 ilvE 1198234..1199172 (-) 939 WP_162808881.1 branched-chain-amino-acid transaminase -
  ET951_RS05570 ilvM 1199184..1199468 (-) 285 WP_001190201.1 acetolactate synthase 2 small subunit -
  ET951_RS05575 ilvG 1199480..1201126 (-) 1647 WP_154113093.1 acetolactate synthase 2 catalytic subunit -
  ET951_RS05580 comM 1201660..1203183 (+) 1524 WP_154113094.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ET951_RS05585 - 1203274..1204155 (+) 882 WP_000881897.1 acyltransferase -
  ET951_RS05590 - 1204217..1204822 (-) 606 WP_000732288.1 thiol:disulfide interchange protein DsbA/DsbL -
  ET951_RS05595 - 1204854..1205840 (-) 987 WP_000189611.1 serine/threonine protein kinase -
  ET951_RS05600 ccoG 1205888..1207312 (-) 1425 WP_154113095.1 cytochrome c oxidase accessory protein CcoG -
  ET951_RS05605 - 1207576..1207842 (-) 267 WP_000649656.1 YihD family protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54856.00 Da        Isoelectric Point: 8.2672

>NTDB_id=343596 ET951_RS05580 WP_154113094.1 1201660..1203183(+) (comM) [Vibrio mimicus strain 2011V-1073]
MGLAIIHSRASIGVQAPPVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASDQIARTKLESCEFIGELALSGEIRGVKGVLPAALAANQVNRCLVVPHGNGDQAALVGSERHKSAQSL
LEVCADLCGQQNLSLFQSAPSVLEIPTTRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASIASLTQQEINQHNWKLRPFRSPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIVISRAQGKTRFPARFQLVGALNPSPTGYYEGSQARANPQSILRYLSRLSGPLLDRFDMSIEIPALPKGTLANGGDR
GESTAAVRQRVLAARERMLVRSGKVNALLQSREIEQYCPLVKADAEFLESALHRLGLSIRAYHRIIKVARTIADLQGEAQ
IARPHLAEALGYRAMDRLLKQLSAQNV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=343596 ET951_RS05580 WP_154113094.1 1201660..1203183(+) (comM) [Vibrio mimicus strain 2011V-1073]
ATGGGACTTGCGATCATTCATAGCCGCGCCAGTATTGGCGTGCAGGCTCCTCCGGTTACGGTTGAGGTTCACATCAGTAA
TGGAATGCCGGGGTTTACCTTAGTTGGGTTGCCGGAAACCACGGTAAAAGAGTCACGCGATCGAGTGCGTAGTGCGATCA
TTAACTCTCGGTTTGAGTTTCCAGCGAAACGCATTACGGTCAATTTAGCCCCTGCTGATCTGCCTAAAGAGGGAGGGCGT
TTCGATCTTCCGATTGCACTCGGCATTTTGGCGGCCTCGGATCAAATTGCGCGAACTAAGCTCGAAAGTTGCGAATTTAT
TGGTGAACTGGCGCTATCGGGTGAAATTCGTGGCGTGAAAGGGGTATTACCTGCCGCACTCGCTGCTAATCAAGTCAATC
GCTGTTTAGTGGTACCACACGGTAATGGTGATCAGGCTGCGTTGGTGGGGAGTGAACGGCATAAATCTGCGCAAAGCTTA
TTGGAAGTATGTGCCGATCTGTGTGGACAGCAGAACCTGTCGTTATTTCAAAGTGCACCAAGTGTGTTGGAGATACCAAC
TACCCGCGATTTGCAGGATATTATTGGTCAGCAACAGGGTAAGCGTGCGTTGGAAATTGCAGCGGCAGGAAACCATAACC
TGTTGTTTTTAGGTCCTCCGGGTACGGGTAAAACCATGCTCGCTTCGCGCCTGTGCGATTTACTGCCGGAAATGAGTGAC
GAAGAGGCGATGGAAACGGCATCGATCGCGTCCCTCACGCAGCAAGAAATTAACCAACATAACTGGAAATTGCGCCCTTT
TCGTTCGCCACACCATTCAAGCTCAATGGCGGCTTTAGTCGGTGGTGGCACCATTCCGCGTCCCGGTGAAATTTCTCTTG
CCCATAATGGTCTGCTGTTTTTGGACGAAATGCCGGAGTTTGAGCGCAAAGTGCTGGATTCTCTGCGTGAACCGCTGGAA
TCGGGGGAAATTGTGATTTCTCGTGCGCAAGGTAAAACTCGTTTTCCGGCGCGCTTTCAATTGGTCGGCGCGTTAAATCC
AAGCCCAACCGGCTATTACGAGGGCAGTCAGGCACGTGCTAATCCACAGAGTATTCTGCGCTATTTGAGTCGGCTCTCTG
GCCCTTTGTTGGATCGCTTTGATATGTCGATAGAGATCCCAGCCTTACCGAAGGGCACCTTGGCCAATGGTGGTGATCGT
GGTGAATCCACCGCGGCTGTGCGTCAGCGAGTGTTGGCTGCTCGGGAGCGAATGCTTGTACGTTCTGGTAAGGTGAATGC
CTTGCTGCAAAGCCGAGAAATTGAACAATATTGTCCTTTGGTCAAAGCTGATGCCGAGTTTTTGGAAAGTGCGCTCCATC
GTTTGGGTTTATCTATTCGTGCTTACCACCGCATCATCAAAGTGGCGCGAACCATTGCTGATTTGCAAGGTGAAGCGCAG
ATTGCTCGGCCACATCTGGCGGAGGCGTTAGGTTATCGAGCGATGGATAGGCTACTCAAGCAACTGAGTGCGCAGAATGT
CTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

96.647

100

0.966
  comM Vibrio campbellii strain DS40M4

84.646

100

0.848
  comM Haemophilus influenzae Rd KW20

67.061

100

0.671
  comM Glaesserella parasuis strain SC1401

64.706

100

0.651
  comM Legionella pneumophila str. Paris

51.008

97.83

0.499
  comM Legionella pneumophila strain ERS1305867

51.008

97.83

0.499
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.504

100

0.436

Multiple sequence alignment