Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ET951_RS03790 Genome accession   NZ_CP035682
Coordinates   824955..825488 (-) Length   177 a.a.
NCBI ID   WP_000235464.1    Uniprot ID   -
Organism   Vibrio mimicus strain 2011V-1073     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 819955..830488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ET951_RS03770 - 820410..820727 (-) 318 WP_000252815.1 hypothetical protein -
  ET951_RS03775 gspM 820720..821370 (-) 651 WP_154112965.1 type II secretion system protein GspM -
  ET951_RS03780 - 821367..822806 (-) 1440 WP_000743243.1 MSHA biogenesis protein MshI -
  ET951_RS03785 csrD 822819..824777 (-) 1959 WP_229600499.1 RNase E specificity factor CsrD -
  ET951_RS03790 ssb 824955..825488 (-) 534 WP_000235464.1 single-stranded DNA-binding protein Machinery gene
  ET951_RS03795 qstR 825780..826424 (+) 645 WP_005522682.1 LuxR C-terminal-related transcriptional regulator Regulator
  ET951_RS03800 galU 826598..827470 (+) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  ET951_RS03805 uvrA 827626..830448 (+) 2823 WP_000357709.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19742.95 Da        Isoelectric Point: 5.7626

>NTDB_id=343591 ET951_RS03790 WP_000235464.1 824955..825488(-) (ssb) [Vibrio mimicus strain 2011V-1073]
MATRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKTTGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYSTEVVVQGYNGIMQMLGGRAQQGGMPAQQGGMNAPQQGGWGQPQQPAKQHQPMQQSAPQQYS
QPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=343591 ET951_RS03790 WP_000235464.1 824955..825488(-) (ssb) [Vibrio mimicus strain 2011V-1073]
ATGGCAACCCGTGGCGTAAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGGCGCAGTAGCGAATATCACTATCGCGACCTCCGAAACTTGGCGTGACAAAACCACGGGTGAGCAGAAGGAAAAAACCG
AATGGCACCGTGTGACTCTGTATGGAAAGCTGGCAGAAGTTGCTGGTGAGTATCTGCGTAAAGGTTCTCAAGTCTACATT
GAAGGCCAACTGCAAACTCGTAAGTGGCAAGATCAGAATGGTCAAGATCGCTACTCAACTGAAGTGGTTGTACAAGGCTA
CAACGGCATCATGCAGATGCTAGGTGGTCGTGCCCAACAGGGTGGAATGCCAGCTCAGCAAGGCGGCATGAATGCACCAC
AACAAGGTGGTTGGGGACAACCTCAGCAACCAGCGAAACAGCATCAACCGATGCAACAATCGGCACCTCAGCAGTACTCG
CAACCGCAGTACAACGAGCCGCCGATGGATTTTGATGACGACATCCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

96.067

100

0.966
  ssb Glaesserella parasuis strain SC1401

53.297

100

0.548
  ssb Neisseria gonorrhoeae MS11

46.524

100

0.492
  ssb Neisseria meningitidis MC58

45.745

100

0.486

Multiple sequence alignment