Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   ET951_RS03795 Genome accession   NZ_CP035682
Coordinates   825780..826424 (+) Length   214 a.a.
NCBI ID   WP_005522682.1    Uniprot ID   -
Organism   Vibrio mimicus strain 2011V-1073     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 820780..831424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ET951_RS03780 - 821367..822806 (-) 1440 WP_000743243.1 MSHA biogenesis protein MshI -
  ET951_RS03785 csrD 822819..824777 (-) 1959 WP_229600499.1 RNase E specificity factor CsrD -
  ET951_RS03790 ssb 824955..825488 (-) 534 WP_000235464.1 single-stranded DNA-binding protein Machinery gene
  ET951_RS03795 qstR 825780..826424 (+) 645 WP_005522682.1 LuxR C-terminal-related transcriptional regulator Regulator
  ET951_RS03800 galU 826598..827470 (+) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  ET951_RS03805 uvrA 827626..830448 (+) 2823 WP_000357709.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24770.59 Da        Isoelectric Point: 9.6351

>NTDB_id=343592 ET951_RS03795 WP_005522682.1 825780..826424(+) (qstR) [Vibrio mimicus strain 2011V-1073]
MQRTNYARTIYLLTTQPKALHPSIQAAIEQLNLPVPVIEPERLLREYQSDKHKILLLDHAENSQIRQQLGPLKLTSPYFE
TILFNVDKRLKTEDLLIFGNLKGLFYANEDTGFIAHGLGEIINGQNWLPRHVSSQLLHYYRYAFQTHQTQATVDLTAREI
QILRCLQTGASNMQIAESLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQNLL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=343592 ET951_RS03795 WP_005522682.1 825780..826424(+) (qstR) [Vibrio mimicus strain 2011V-1073]
ATGCAACGAACCAATTACGCACGCACCATTTACTTGCTGACCACTCAACCCAAAGCTTTACATCCCTCTATTCAGGCGGC
GATAGAACAACTGAATCTTCCCGTCCCTGTGATTGAGCCGGAGCGTTTACTGCGCGAGTATCAATCCGATAAACACAAAA
TTTTGCTGCTCGATCATGCAGAAAACAGCCAGATCCGCCAGCAACTTGGGCCACTCAAGCTCACTAGCCCCTATTTTGAA
ACCATTCTGTTTAATGTGGATAAACGGCTAAAAACTGAAGACCTACTCATCTTCGGTAACCTAAAAGGGCTATTTTATGC
CAATGAAGATACTGGTTTTATTGCGCATGGACTCGGAGAGATCATCAATGGTCAGAACTGGTTACCACGCCACGTAAGCA
GCCAGTTATTACACTACTATCGTTACGCTTTCCAAACCCATCAAACTCAGGCTACGGTTGACCTCACCGCACGTGAAATT
CAAATTCTGCGCTGCCTACAGACCGGAGCTTCAAATATGCAAATTGCAGAGAGTTTGTTTATTAGTGAGTTCACGGTAAA
ATCCCATCTCTATCAGATATTTAAAAAGTTGAATGTGAAAAATCGAGTCAAAGCGATTGCCTGGGTAAACCAAAATTTAT
TGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

95.794

100

0.958
  qstR Vibrio campbellii strain DS40M4

52.804

100

0.528
  qstR Vibrio parahaemolyticus RIMD 2210633

52.558

100

0.528

Multiple sequence alignment