Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EWA66_RS05805 Genome accession   NZ_CP035680
Coordinates   1228306..1228848 (+) Length   180 a.a.
NCBI ID   WP_039435746.1    Uniprot ID   A0AAI9G9M3
Organism   Vibrio navarrensis strain 08-2462     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1223306..1233848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EWA66_RS05790 uvrA 1223342..1226164 (-) 2823 WP_039440398.1 excinuclease ABC subunit UvrA -
  EWA66_RS05795 galU 1226307..1227179 (-) 873 WP_039440400.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  EWA66_RS05800 qstR 1227363..1228010 (-) 648 WP_039440402.1 LuxR C-terminal-related transcriptional regulator Regulator
  EWA66_RS05805 ssb 1228306..1228848 (+) 543 WP_039435746.1 single-stranded DNA-binding protein Machinery gene
  EWA66_RS05810 csrD 1228999..1230993 (+) 1995 WP_039440404.1 RNase E specificity factor CsrD -
  EWA66_RS05815 - 1231006..1232445 (+) 1440 WP_039440406.1 hypothetical protein -
  EWA66_RS05820 pilO 1232445..1233095 (+) 651 WP_039440409.1 type 4a pilus biogenesis protein PilO -
  EWA66_RS05825 - 1233088..1233411 (+) 324 WP_039440412.1 hypothetical protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19782.86 Da        Isoelectric Point: 5.6659

>NTDB_id=343550 EWA66_RS05805 WP_039435746.1 1228306..1228848(+) (ssb) [Vibrio navarrensis strain 08-2462]
MASRGINKVILVGNLGNDPEIRYMPSGGAVANITVATSETWRDKATGEPREKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYSTDIVVQGYSGVMQMLGGRPQGGAPAMGGAPQAQQQGGWGQPQQPAAHQQQSYQAPAQQHAP
QQSQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=343550 EWA66_RS05805 WP_039435746.1 1228306..1228848(+) (ssb) [Vibrio navarrensis strain 08-2462]
ATGGCCAGCCGTGGAATTAATAAAGTCATCTTGGTAGGGAACCTAGGGAACGACCCTGAAATTCGTTATATGCCAAGCGG
CGGTGCAGTGGCTAACATTACCGTTGCTACTTCAGAAACTTGGCGCGACAAAGCGACTGGCGAACCGCGTGAAAAAACGG
AATGGCATCGTGTTACCCTGTATGGAAAACTCGCTGAAGTCGCAGGTGAATATCTGCGTAAAGGTTCTCAGGTTTACATT
GAAGGCCAATTGCAGACGCGCAAGTGGCAAGATCAAAATGGTCAAGATCGCTACTCAACAGACATCGTGGTACAAGGCTA
CAGCGGTGTGATGCAGATGCTGGGTGGACGTCCGCAAGGCGGCGCGCCAGCGATGGGTGGTGCACCTCAAGCGCAGCAAC
AGGGGGGCTGGGGACAGCCACAACAGCCAGCCGCGCATCAGCAGCAGTCATATCAAGCGCCTGCACAGCAGCATGCCCCG
CAGCAATCTCAGCCGCAGTATAATGAACCGCCAATGGATTTCGATGACGATATTCCTTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.868

100

0.828
  ssb Glaesserella parasuis strain SC1401

53.723

100

0.561
  ssb Neisseria meningitidis MC58

49.18

100

0.5
  ssb Neisseria gonorrhoeae MS11

49.18

100

0.5

Multiple sequence alignment