Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   EWA66_RS05800 Genome accession   NZ_CP035680
Coordinates   1227363..1228010 (-) Length   215 a.a.
NCBI ID   WP_039440402.1    Uniprot ID   -
Organism   Vibrio navarrensis strain 08-2462     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1222363..1233010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EWA66_RS05790 uvrA 1223342..1226164 (-) 2823 WP_039440398.1 excinuclease ABC subunit UvrA -
  EWA66_RS05795 galU 1226307..1227179 (-) 873 WP_039440400.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  EWA66_RS05800 qstR 1227363..1228010 (-) 648 WP_039440402.1 LuxR C-terminal-related transcriptional regulator Regulator
  EWA66_RS05805 ssb 1228306..1228848 (+) 543 WP_039435746.1 single-stranded DNA-binding protein Machinery gene
  EWA66_RS05810 csrD 1228999..1230993 (+) 1995 WP_039440404.1 RNase E specificity factor CsrD -
  EWA66_RS05815 - 1231006..1232445 (+) 1440 WP_039440406.1 hypothetical protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24641.58 Da        Isoelectric Point: 9.0353

>NTDB_id=343549 EWA66_RS05800 WP_039440402.1 1227363..1228010(-) (qstR) [Vibrio navarrensis strain 08-2462]
MRKSSYARSLFFLQQANTQPPAFIDTLARAIDLPIPAITTDTLMRTDPLHRNRILLIDYQEHKVLLLQIRNLPLICKNFE
TIIFNVPKRLSTDELLGLGQSKAVFYSDCSMEKIAEGVIAVIEGQNWLPRHVQAQLLHYYRNMFNTHTAPANVDLTIREI
QVLRCLQAGASNAHIAEDLFISEYTVKSHLYQIFKKLSVKNRLQATAWADQHLLS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=343549 EWA66_RS05800 WP_039440402.1 1227363..1228010(-) (qstR) [Vibrio navarrensis strain 08-2462]
ATGAGAAAATCCTCCTATGCCAGAAGCTTGTTCTTTCTCCAGCAAGCAAACACACAACCCCCAGCATTTATTGATACCTT
AGCGCGCGCCATCGATCTCCCTATACCAGCGATTACCACAGACACCTTGATGCGAACCGATCCCTTGCACCGTAACCGCA
TCTTGTTGATCGACTACCAAGAACACAAAGTATTGCTGTTACAAATTAGAAATCTGCCACTGATCTGCAAAAACTTTGAA
ACCATCATTTTCAACGTACCAAAACGATTGAGCACCGATGAGCTGCTCGGCCTTGGACAGAGCAAAGCGGTTTTCTACTC
AGATTGCAGCATGGAAAAAATTGCCGAAGGCGTTATTGCCGTGATTGAAGGGCAAAACTGGCTACCTCGCCACGTTCAAG
CGCAGCTTCTGCATTACTACCGCAATATGTTCAACACCCATACCGCGCCCGCCAATGTAGATTTGACCATTCGCGAAATT
CAAGTGCTACGCTGCTTGCAAGCAGGGGCGAGCAATGCTCACATCGCCGAAGATCTGTTTATCAGTGAATACACGGTCAA
ATCACATCTTTATCAGATTTTTAAAAAGCTCTCGGTAAAAAACCGTCTTCAGGCCACCGCCTGGGCCGATCAACATCTAC
TCTCGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

64.186

100

0.642
  qstR Vibrio campbellii strain DS40M4

63.721

100

0.637
  qstR Vibrio cholerae strain A1552

52.074

100

0.526

Multiple sequence alignment