Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | EWG56_RS11965 | Genome accession | NZ_CP035671 |
| Coordinates | 2358871..2359341 (+) | Length | 156 a.a. |
| NCBI ID | WP_000610650.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain VB31683 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2333834..2387824 | 2358871..2359341 | within | 0 |
Gene organization within MGE regions
Location: 2333834..2387824
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EWG56_RS11795 (EWG56_11795) | groES | 2333834..2334118 (+) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| EWG56_RS11800 (EWG56_11800) | groL | 2334194..2335810 (+) | 1617 | WP_000240649.1 | chaperonin GroEL | - |
| EWG56_RS11805 (EWG56_11805) | - | 2335905..2336451 (-) | 547 | Protein_2243 | site-specific integrase | - |
| EWG56_RS11810 (EWG56_11810) | - | 2336512..2336724 (+) | 213 | WP_000128898.1 | hypothetical protein | - |
| EWG56_RS11815 (EWG56_11815) | - | 2336721..2337311 (+) | 591 | WP_001293059.1 | terminase small subunit | - |
| EWG56_RS11820 (EWG56_11820) | - | 2337628..2338065 (+) | 438 | WP_072419900.1 | hypothetical protein | - |
| EWG56_RS11825 (EWG56_11825) | - | 2338171..2338614 (+) | 444 | WP_000022887.1 | GNAT family N-acetyltransferase | - |
| EWG56_RS11835 (EWG56_11835) | - | 2339457..2340764 (-) | 1308 | WP_001045063.1 | TrkH family potassium uptake protein | - |
| EWG56_RS11840 (EWG56_11840) | - | 2340925..2341836 (+) | 912 | WP_000825510.1 | iron-hydroxamate ABC transporter substrate-binding protein | - |
| EWG56_RS11845 (EWG56_11845) | - | 2341898..2342743 (+) | 846 | WP_000812008.1 | class I SAM-dependent methyltransferase | - |
| EWG56_RS11850 (EWG56_11850) | - | 2343115..2344338 (-) | 1224 | WP_000206641.1 | ArgE/DapE family deacylase | - |
| EWG56_RS11855 (EWG56_11855) | lukH | 2344773..2345825 (+) | 1053 | WP_000791416.1 | bi-component leukocidin LukGH subunit H | - |
| EWG56_RS11860 (EWG56_11860) | lukG | 2345847..2346863 (+) | 1017 | WP_000595402.1 | bi-component leukocidin LukGH subunit G | - |
| EWG56_RS11865 (EWG56_11865) | sph | 2347101..2347931 (-) | 831 | Protein_2254 | sphingomyelin phosphodiesterase | - |
| EWG56_RS11870 (EWG56_11870) | - | 2347982..2349019 (-) | 1038 | WP_000857176.1 | site-specific integrase | - |
| EWG56_RS11875 (EWG56_11875) | - | 2349127..2349743 (+) | 617 | Protein_2256 | ATPase | - |
| EWG56_RS11880 (EWG56_11880) | - | 2349740..2349886 (-) | 147 | WP_001013104.1 | hypothetical protein | - |
| EWG56_RS11885 (EWG56_11885) | - | 2349922..2350104 (-) | 183 | WP_000694772.1 | hypothetical protein | - |
| EWG56_RS11890 (EWG56_11890) | - | 2350304..2351074 (-) | 771 | WP_001208482.1 | S24 family peptidase | - |
| EWG56_RS11895 (EWG56_11895) | - | 2351233..2351457 (+) | 225 | WP_000338186.1 | DUF739 family protein | - |
| EWG56_RS11900 (EWG56_11900) | - | 2351475..2351735 (+) | 261 | WP_000435341.1 | transcriptional regulator | - |
| EWG56_RS11905 (EWG56_11905) | - | 2351759..2352296 (-) | 538 | Protein_2262 | hypothetical protein | - |
| EWG56_RS11910 (EWG56_11910) | - | 2352353..2353105 (+) | 753 | WP_024928163.1 | phage antirepressor KilAC domain-containing protein | - |
| EWG56_RS11915 (EWG56_11915) | - | 2353121..2353318 (+) | 198 | Protein_2264 | hypothetical protein | - |
| EWG56_RS11920 (EWG56_11920) | - | 2353349..2353489 (+) | 141 | WP_000939496.1 | hypothetical protein | - |
| EWG56_RS11925 (EWG56_11925) | - | 2353504..2354136 (-) | 633 | WP_000275058.1 | hypothetical protein | - |
| EWG56_RS11930 (EWG56_11930) | - | 2354195..2354515 (+) | 321 | WP_001120197.1 | DUF771 domain-containing protein | - |
| EWG56_RS11935 (EWG56_11935) | - | 2354512..2354673 (+) | 162 | WP_070149316.1 | DUF1270 family protein | - |
| EWG56_RS11940 (EWG56_11940) | - | 2354766..2355026 (+) | 261 | WP_000291488.1 | DUF1108 family protein | - |
| EWG56_RS11945 (EWG56_11945) | - | 2355035..2355298 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| EWG56_RS11950 (EWG56_11950) | - | 2355307..2357250 (+) | 1944 | WP_000700560.1 | AAA family ATPase | - |
| EWG56_RS11955 (EWG56_11955) | - | 2357252..2358172 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| EWG56_RS11960 (EWG56_11960) | - | 2358253..2358870 (+) | 618 | WP_073394849.1 | MBL fold metallo-hydrolase | - |
| EWG56_RS11965 (EWG56_11965) | ssbA | 2358871..2359341 (+) | 471 | WP_000610650.1 | single-stranded DNA-binding protein | Machinery gene |
| EWG56_RS11970 (EWG56_11970) | - | 2359371..2360264 (+) | 894 | WP_000148326.1 | DnaD domain-containing protein | - |
| EWG56_RS11975 (EWG56_11975) | - | 2360271..2360489 (+) | 219 | WP_000338530.1 | hypothetical protein | - |
| EWG56_RS11980 (EWG56_11980) | - | 2360498..2360902 (+) | 405 | WP_000401976.1 | RusA family crossover junction endodeoxyribonuclease | - |
| EWG56_RS11985 (EWG56_11985) | - | 2360915..2361286 (+) | 372 | WP_000101268.1 | SA1788 family PVL leukocidin-associated protein | - |
| EWG56_RS11990 (EWG56_11990) | - | 2361287..2361535 (+) | 249 | WP_001126836.1 | phi PVL orf 51-like protein | - |
| EWG56_RS11995 (EWG56_11995) | - | 2361600..2362049 (+) | 450 | WP_000982708.1 | YopX family protein | - |
| EWG56_RS12000 (EWG56_12000) | - | 2362046..2362330 (+) | 285 | WP_001105620.1 | hypothetical protein | - |
| EWG56_RS12005 (EWG56_12005) | - | 2362323..2362577 (+) | 255 | WP_000370292.1 | DUF1024 family protein | - |
| EWG56_RS12010 (EWG56_12010) | - | 2362697..2362897 (+) | 201 | WP_000265042.1 | DUF1514 family protein | - |
| EWG56_RS12015 (EWG56_12015) | - | 2362925..2363341 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| EWG56_RS12020 (EWG56_12020) | - | 2363573..2363872 (+) | 300 | WP_000988332.1 | HNH endonuclease | - |
| EWG56_RS12025 (EWG56_12025) | - | 2364003..2364347 (+) | 345 | WP_000402904.1 | hypothetical protein | - |
| EWG56_RS12030 (EWG56_12030) | - | 2364344..2366004 (+) | 1661 | Protein_2287 | terminase large subunit | - |
| EWG56_RS12035 (EWG56_12035) | - | 2366020..2367207 (+) | 1188 | WP_000025274.1 | phage portal protein | - |
| EWG56_RS12040 (EWG56_12040) | - | 2367191..2367928 (+) | 738 | WP_000642728.1 | head maturation protease, ClpP-related | - |
| EWG56_RS12045 (EWG56_12045) | - | 2367952..2369097 (+) | 1146 | WP_000154555.1 | phage major capsid protein | - |
| EWG56_RS12050 (EWG56_12050) | - | 2369117..2369401 (+) | 285 | WP_000238236.1 | hypothetical protein | - |
| EWG56_RS12055 (EWG56_12055) | - | 2369391..2369675 (+) | 285 | WP_000150936.1 | phage head-tail adapter protein | - |
| EWG56_RS12060 (EWG56_12060) | - | 2369659..2370021 (+) | 363 | WP_000755150.1 | head-tail adaptor protein | - |
| EWG56_RS12065 (EWG56_12065) | - | 2370018..2370422 (+) | 405 | WP_000114225.1 | HK97 gp10 family phage protein | - |
| EWG56_RS12070 (EWG56_12070) | - | 2370419..2370826 (+) | 408 | WP_000565498.1 | hypothetical protein | - |
| EWG56_RS12075 (EWG56_12075) | - | 2370827..2371471 (+) | 645 | WP_000268739.1 | major tail protein | - |
| EWG56_RS12080 (EWG56_12080) | - | 2371525..2371737 (+) | 213 | WP_078101489.1 | Ig-like domain-containing protein | - |
| EWG56_RS12085 (EWG56_12085) | - | 2371787..2372137 (+) | 351 | WP_001096355.1 | hypothetical protein | - |
| EWG56_RS15035 | - | 2372191..2372325 (+) | 135 | WP_000364140.1 | hypothetical protein | - |
| EWG56_RS12090 (EWG56_12090) | - | 2372382..2376911 (+) | 4530 | WP_001805631.1 | phage tail tape measure protein | - |
| EWG56_RS12095 (EWG56_12095) | - | 2376908..2378392 (+) | 1485 | WP_000567408.1 | phage tail domain-containing protein | - |
| EWG56_RS12100 (EWG56_12100) | - | 2378408..2382192 (+) | 3785 | Protein_2302 | phage tail spike protein | - |
| EWG56_RS12105 (EWG56_12105) | - | 2382182..2382334 (+) | 153 | WP_001153681.1 | hypothetical protein | - |
| EWG56_RS12110 (EWG56_12110) | - | 2382381..2382668 (+) | 288 | WP_001040261.1 | hypothetical protein | - |
| EWG56_RS12115 (EWG56_12115) | - | 2382726..2383022 (+) | 297 | WP_000539688.1 | DUF2951 domain-containing protein | - |
| EWG56_RS12120 (EWG56_12120) | pepG1 | 2383216..2383350 (+) | 135 | WP_000880504.1 | type I toxin-antitoxin system toxin PepG1 | - |
| EWG56_RS12125 (EWG56_12125) | - | 2383403..2383510 (-) | 108 | WP_031762631.1 | hypothetical protein | - |
| EWG56_RS12130 (EWG56_12130) | - | 2383562..2383816 (+) | 255 | WP_000611512.1 | phage holin | - |
| EWG56_RS12135 (EWG56_12135) | - | 2383828..2384583 (+) | 756 | WP_000861038.1 | CHAP domain-containing protein | - |
| EWG56_RS12140 (EWG56_12140) | sak | 2384774..2385265 (+) | 492 | WP_000920041.1 | staphylokinase | - |
| EWG56_RS12160 (EWG56_12160) | - | 2385916..2386250 (+) | 335 | Protein_2311 | SH3 domain-containing protein | - |
| EWG56_RS12165 (EWG56_12165) | - | 2386343..2386792 (-) | 450 | WP_000727643.1 | chemotaxis-inhibiting protein CHIPS | - |
| EWG56_RS12170 (EWG56_12170) | scn | 2387474..2387824 (+) | 351 | WP_000702262.1 | complement inhibitor SCIN-A | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17658.50 Da Isoelectric Point: 4.9628
>NTDB_id=343486 EWG56_RS11965 WP_000610650.1 2358871..2359341(+) (ssbA) [Staphylococcus aureus strain VB31683]
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINVIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDDDLPF
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINVIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=343486 EWG56_RS11965 WP_000610650.1 2358871..2359341(+) (ssbA) [Staphylococcus aureus strain VB31683]
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAATCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATAAATGTCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACGATGATTTACCATTCTAA
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAATCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATAAATGTCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACGATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.367 |
100 |
0.628 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.765 |
100 |
0.564 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Vibrio cholerae strain A1552 |
31.492 |
100 |
0.365 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |