Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EUB48_RS20625 Genome accession   NZ_CP035503
Coordinates   4263540..4265063 (+) Length   507 a.a.
NCBI ID   WP_142820923.1    Uniprot ID   A0A515DGA9
Organism   Rhodoferax sediminis strain CHu59-6-5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4258540..4270063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EUB48_RS20600 (EUB48_20570) - 4258966..4259451 (+) 486 WP_142820918.1 glutathione peroxidase -
  EUB48_RS20605 (EUB48_20575) - 4259529..4260452 (-) 924 WP_142820919.1 SMP-30/gluconolactonase/LRE family protein -
  EUB48_RS20610 (EUB48_20580) - 4260609..4262132 (-) 1524 WP_142820920.1 ammonium transporter -
  EUB48_RS20615 (EUB48_20585) glnK 4262162..4262500 (-) 339 WP_142820921.1 P-II family nitrogen regulator -
  EUB48_RS20620 (EUB48_20590) - 4262528..4263334 (-) 807 WP_142820922.1 TorF family putative porin -
  EUB48_RS20625 (EUB48_20595) comM 4263540..4265063 (+) 1524 WP_142820923.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EUB48_RS20630 (EUB48_20600) - 4265100..4265825 (+) 726 WP_142820924.1 aspartate/glutamate racemase family protein -
  EUB48_RS20635 (EUB48_20605) - 4265962..4267077 (+) 1116 WP_142820925.1 Fic family protein -
  EUB48_RS20640 (EUB48_20610) - 4267151..4268092 (+) 942 WP_142820926.1 GSU2403 family nucleotidyltransferase fold protein -
  EUB48_RS20645 (EUB48_20615) - 4268109..4268477 (-) 369 WP_077562161.1 DsrE family protein -
  EUB48_RS20650 (EUB48_20620) - 4268641..4269345 (-) 705 WP_142820927.1 glutathione binding-like protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 53312.05 Da        Isoelectric Point: 7.8047

>NTDB_id=342902 EUB48_RS20625 WP_142820923.1 4263540..4265063(+) (comM) [Rhodoferax sediminis strain CHu59-6-5]
MSLSLVQSRALLGLEAAAVTVEVHLANGLPSFTLVGLADVEVKEARERVRSAIQNSGLEFPGNKRITVNLAPADLPKDSG
RFDLPIALGILAASGQIDAARLAGHEFAGELSLSGELRPVRGALAMSLALHAGHVVTQLVLPPGSAEEAALVPDAQVYRA
AHLLDVVRQFLPQGAGAAEPLDGWSRVTPSAAPATAPYADLADIKGQVAAKRALEIAAAGGHSLLLMGPPGSGKSMLAQR
FAGLLPPMTVEEALQSAAIASLGGRFSLARWAVRPTCSPHHTASAVALVGGGSPPRPGEISLAHHGVLFLDEFPEFPRAA
LEALREPLETGTITISRAARRSEFPARFQMIGAMNPCPCGYLGSPLKACRCTPDQVARYQGKLSGPLLDRIDLHVEVPAL
PPQDLVQAPPGESSHDIRERCSAARERAVARQGKTNQALQGQEIDEYLALDAAAVRFLNTAATRLGWSARSTHRALKVAR
TIADLAGAHSTQVTHVAETIQYRRALS

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=342902 EUB48_RS20625 WP_142820923.1 4263540..4265063(+) (comM) [Rhodoferax sediminis strain CHu59-6-5]
ATGAGCCTGTCTTTGGTGCAAAGCCGTGCCCTGCTGGGCCTGGAGGCGGCGGCCGTCACCGTTGAGGTGCACCTGGCCAA
TGGCCTGCCCAGTTTCACGCTGGTCGGGCTCGCCGACGTCGAGGTCAAGGAGGCGCGCGAGCGCGTGCGCTCGGCGATCC
AGAACTCGGGGCTGGAGTTTCCGGGCAACAAGCGCATCACCGTGAACCTGGCGCCCGCCGACTTGCCCAAGGATTCCGGG
CGCTTCGATTTGCCGATCGCGCTCGGCATCCTGGCCGCCAGCGGCCAGATCGACGCGGCGCGGCTCGCCGGTCACGAGTT
TGCCGGCGAGCTGTCGCTGTCGGGCGAACTGCGCCCGGTGCGCGGCGCGCTGGCCATGAGCCTGGCGCTGCATGCCGGCC
ACGTCGTCACCCAGCTGGTGCTGCCGCCCGGCAGCGCCGAAGAGGCCGCGCTGGTGCCCGATGCACAAGTCTACCGCGCG
GCACATCTGCTCGATGTGGTGCGCCAGTTCCTGCCGCAAGGCGCGGGCGCCGCGGAGCCGCTTGATGGCTGGTCGCGCGT
CACACCCAGCGCCGCGCCTGCCACGGCGCCCTACGCCGACCTGGCCGACATCAAGGGCCAGGTGGCGGCGAAACGCGCGC
TGGAAATCGCGGCGGCCGGCGGACACAGTCTCCTGCTGATGGGCCCGCCGGGCTCCGGCAAATCCATGCTGGCGCAGCGC
TTTGCCGGCCTGCTGCCGCCCATGACGGTGGAGGAAGCGCTGCAAAGCGCGGCCATCGCCAGCCTGGGCGGGCGCTTCTC
GCTGGCGCGCTGGGCCGTGCGCCCCACCTGCAGCCCGCACCACACGGCCAGCGCCGTGGCGCTGGTGGGAGGCGGCTCGC
CGCCACGGCCGGGCGAGATTTCACTGGCGCACCACGGCGTGCTGTTTCTCGACGAATTTCCCGAGTTCCCAAGGGCCGCG
CTCGAGGCCCTGCGCGAACCGCTGGAGACCGGCACCATCACGATCTCGCGCGCGGCGCGGCGCTCCGAATTTCCGGCGCG
CTTTCAGATGATCGGCGCCATGAACCCCTGCCCCTGCGGCTACCTCGGCTCGCCGCTCAAGGCCTGCCGCTGCACGCCGG
ATCAGGTCGCGCGCTACCAGGGCAAGCTCAGCGGCCCGCTGCTGGACCGCATCGACCTGCACGTCGAAGTGCCGGCGCTG
CCGCCGCAGGACCTGGTGCAGGCGCCGCCGGGCGAATCCAGCCACGACATCCGCGAGCGCTGCAGCGCGGCCCGGGAGCG
CGCCGTGGCGCGCCAGGGCAAGACGAATCAGGCGCTGCAAGGCCAGGAGATCGACGAGTATCTGGCGCTCGACGCCGCCG
CCGTCCGATTCCTCAACACCGCCGCCACCCGCCTCGGCTGGTCGGCGCGCAGCACTCACCGCGCGCTCAAGGTGGCGCGC
ACCATCGCCGACCTGGCCGGCGCGCACAGCACGCAGGTCACGCACGTGGCCGAGACGATCCAGTACCGTCGCGCCTTGTC
CTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(411-503)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A515DGA9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.475

99.606

0.523
  comM Glaesserella parasuis strain SC1401

50.193

100

0.513
  comM Vibrio campbellii strain DS40M4

51.485

99.606

0.513
  comM Haemophilus influenzae Rd KW20

50.984

100

0.511
  comM Legionella pneumophila str. Paris

49.216

100

0.495
  comM Legionella pneumophila strain ERS1305867

49.216

100

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.811

100

0.44

Multiple sequence alignment