Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   F7V86_RS06355 Genome accession   NZ_CP044444
Coordinates   1215437..1217620 (+) Length   727 a.a.
NCBI ID   WP_025650414.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain KC41     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1210437..1222620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7V86_RS06325 - 1211389..1212546 (-) 1158 WP_134986776.1 TetR/AcrR family transcriptional regulator -
  F7V86_RS06330 - 1212651..1212874 (+) 224 Protein_1229 aldehyde dehydrogenase family protein -
  F7V86_RS06340 - 1213515..1213738 (+) 224 Protein_1230 helix-turn-helix transcriptional regulator -
  F7V86_RS06345 - 1214283..1214501 (-) 219 WP_025650417.1 hypothetical protein -
  F7V86_RS06350 - 1215058..1215318 (+) 261 WP_025650415.1 hypothetical protein -
  F7V86_RS06355 comA 1215437..1217620 (+) 2184 WP_025650414.1 peptidase domain-containing ABC transporter Regulator
  F7V86_RS06360 - 1217617..1219086 (+) 1470 WP_025650412.1 HlyD family efflux transporter periplasmic adaptor subunit -
  F7V86_RS06365 - 1219562..1220899 (+) 1338 WP_007614893.1 aldehyde dehydrogenase family protein -
  F7V86_RS06370 - 1220932..1222151 (-) 1220 Protein_1236 PQQ-binding-like beta-propeller repeat protein -

Sequence

Protein


Download         Length: 727 a.a.        Molecular weight: 82190.27 Da        Isoelectric Point: 9.1557

>NTDB_id=342632 F7V86_RS06355 WP_025650414.1 1215437..1217620(+) (comA) [Bacillus amyloliquefaciens strain KC41]
MFFKKYHCVKQMDEKDCGAACLSTIARQYGSKLSITYIRDIAGTDTQGTSVLGMVKAAEQLGFSAKAVRAEHAAFDQSIT
LPAIAHIVIDQQLLHYVVIHKISKEKIIIADPGKGLIKYKKDDFLKIWTGILILLTPTEAYEKQKEIRNISSDIFRLILQ
QKSLIIHTFLASFIITIFGILGTFYFQTIIDQILPNGLSNTLHILSIGLLIMYLFKVFLIGFRQYMMILLGQKLSITIMF
GYFKHVLSLPMKFFSNRKVGEIISRFTDANKVIDAVVSASLSILLDTIMLIMVGIFLYLQNATLFLITLAFVPLYILTVW
IFIKPYANINNTEMENNAQLTSKIVETLNGIETVKAYNAEYMMTFETEKRFVKYLRSAFKHGVIDNLQSSIKMFLDLASG
ALILWIGSTQVMKGNLTIGQLITYNALLTYFLNPLQNIIGLQSKFQSASVASKRLGEIIEQDPEIKDNEKRITSISSITG
PIVFNKINFRYGTRRLILKNIALQIQKGEKVAFVGESGSGKSTLTKLLMKFYAAESGEILINGYHINDIHTNALRESISY
IPQESHFIQGSILENLLLGNSGSFTFEEIIEVCKQTKVHDFIDHLPMRYDTLIEENGSNLSGGQKQRLAIARALLRKPNI
LIMDESTSNLDTTTEQGISKMIYDQTYNITTIIIAHRLSTIMNCDKIFVMENGEIKESGSHHDLLMKKGKYYELWENQIP
SKEMVTI

Nucleotide


Download         Length: 2184 bp        

>NTDB_id=342632 F7V86_RS06355 WP_025650414.1 1215437..1217620(+) (comA) [Bacillus amyloliquefaciens strain KC41]
ATGTTTTTTAAAAAATATCACTGTGTAAAACAAATGGATGAAAAAGATTGTGGAGCTGCTTGTTTATCAACCATTGCAAG
ACAATATGGTTCAAAGCTCTCTATAACTTATATCCGTGACATTGCCGGAACTGATACACAGGGAACTAGCGTTCTTGGAA
TGGTAAAAGCCGCTGAACAATTGGGGTTCTCTGCAAAGGCGGTGCGAGCAGAGCATGCAGCTTTCGATCAATCTATTACT
CTTCCGGCAATAGCACATATTGTTATAGATCAACAATTATTGCATTATGTTGTTATACATAAAATCAGTAAAGAAAAGAT
AATCATTGCAGACCCCGGCAAAGGGCTTATTAAATACAAAAAAGATGATTTTTTAAAGATCTGGACAGGGATCTTAATAC
TTTTAACACCCACCGAAGCCTATGAAAAACAAAAAGAGATAAGGAATATAAGTTCAGATATTTTCAGGTTAATTCTTCAA
CAAAAATCCTTGATTATACATACATTCTTAGCATCTTTTATTATTACAATCTTCGGAATTCTGGGTACTTTTTATTTTCA
AACGATTATTGATCAAATCTTGCCGAATGGGCTAAGTAACACATTACATATTCTTTCAATCGGCCTTTTAATTATGTATC
TATTCAAAGTTTTCTTAATAGGATTTAGGCAATATATGATGATCCTGCTGGGTCAGAAATTAAGTATTACCATTATGTTC
GGATACTTCAAACATGTACTTTCTTTACCAATGAAGTTTTTCAGCAACCGAAAAGTCGGAGAAATCATTTCGAGATTTAC
AGATGCTAATAAAGTAATTGATGCTGTTGTCAGTGCATCCCTTTCTATCCTGCTCGATACGATTATGCTTATTATGGTCG
GTATATTTCTGTACCTGCAGAATGCTACGTTGTTTCTCATCACTTTAGCTTTCGTACCACTTTATATTCTGACAGTTTGG
ATCTTTATAAAGCCCTATGCAAATATAAATAACACCGAAATGGAAAACAATGCCCAGCTAACATCGAAAATTGTTGAAAC
GCTTAACGGCATTGAAACAGTTAAGGCTTACAATGCTGAATATATGATGACTTTTGAAACAGAAAAAAGGTTTGTGAAAT
ACTTACGGTCAGCTTTTAAACATGGAGTTATTGATAATCTCCAGAGTTCCATAAAAATGTTTTTAGATTTAGCAAGCGGT
GCATTGATACTGTGGATCGGGTCTACCCAAGTAATGAAAGGCAATCTCACCATCGGTCAGCTCATTACGTATAATGCCTT
ATTAACCTACTTTTTAAATCCTTTACAAAACATTATCGGCCTTCAATCCAAGTTTCAATCAGCTTCTGTCGCTTCTAAAA
GACTCGGTGAAATTATAGAGCAAGATCCAGAAATCAAAGACAATGAGAAACGAATAACATCAATTTCTTCAATAACCGGC
CCCATTGTTTTTAATAAAATTAATTTCCGCTACGGAACTCGAAGGCTCATCCTAAAAAATATTGCACTGCAAATTCAAAA
AGGGGAAAAAGTTGCCTTTGTCGGAGAAAGCGGTTCAGGGAAATCTACTTTGACTAAGCTTTTAATGAAGTTTTATGCTG
CCGAGTCAGGCGAGATTTTAATCAATGGGTATCATATAAATGATATCCACACTAACGCGTTAAGGGAAAGCATAAGCTAT
ATACCTCAAGAATCACATTTTATACAAGGATCTATTCTTGAAAACCTTTTGCTCGGGAATTCAGGAAGTTTTACCTTTGA
GGAAATTATAGAAGTTTGCAAACAAACGAAAGTACACGATTTTATTGATCATTTACCAATGAGATACGATACTCTTATAG
AAGAAAACGGATCTAACTTATCTGGCGGTCAGAAGCAAAGACTGGCAATTGCAAGAGCATTATTGAGAAAACCTAACATT
CTCATTATGGATGAATCCACAAGCAATCTTGATACGACTACTGAACAAGGAATATCAAAGATGATATATGATCAGACTTA
TAATATAACAACGATTATCATCGCTCATCGTTTAAGTACAATCATGAATTGTGACAAAATATTTGTCATGGAAAATGGAG
AAATCAAAGAGTCTGGAAGTCATCATGATTTGTTAATGAAAAAAGGCAAGTACTATGAACTGTGGGAAAACCAAATACCA
TCAAAAGAGATGGTGACAATATGA

Domains

Predicted by InterProScan.

Peptidase C39 family (Peptidase_C39)

(6-139)

ABC transporter transmembrane region (ABC_membrane)

(168-435)

ABC transporter (ABC_tran)

(498-648)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus gordonii str. Challis substr. CH1

42.003

98.9

0.415
  comA/nlmT Streptococcus mutans UA159

40.69

99.725

0.406
  comA Streptococcus mitis SK321

40.89

98.9

0.404
  comA Streptococcus mitis NCTC 12261

40.751

98.9

0.403
  comA Streptococcus pneumoniae Rx1

40.612

98.9

0.402
  comA Streptococcus pneumoniae D39

40.612

98.9

0.402
  comA Streptococcus pneumoniae R6

40.612

98.9

0.402
  comA Streptococcus pneumoniae TIGR4

40.473

98.9

0.4