Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ETN89_RS10155 Genome accession   NZ_CP035457
Coordinates   2116283..2116570 (+) Length   95 a.a.
NCBI ID   WP_086367256.1    Uniprot ID   -
Organism   Photobacterium damselae subsp. damselae strain KC-Na-NB1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2111283..2121570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETN89_RS10145 (ETN89_10145) hupB 2113599..2113871 (+) 273 WP_005298263.1 nucleoid-associated protein HU-beta -
  ETN89_RS10150 (ETN89_10150) ppiD 2114222..2116120 (+) 1899 WP_086367257.1 peptidylprolyl isomerase -
  ETN89_RS10155 (ETN89_10155) comEA 2116283..2116570 (+) 288 WP_086367256.1 ComEA family DNA-binding protein Machinery gene
  ETN89_RS10160 (ETN89_10160) - 2116655..2116993 (-) 339 WP_086367255.1 DUF1971 domain-containing protein -
  ETN89_RS10165 (ETN89_10165) rrtA 2117080..2117637 (-) 558 WP_086367254.1 rhombosortase -
  ETN89_RS10170 (ETN89_10170) - 2117647..2118267 (+) 621 WP_086367253.1 tRNA-uridine aminocarboxypropyltransferase -
  ETN89_RS10180 (ETN89_10180) - 2118570..2119898 (-) 1329 WP_086367252.1 anti-phage deoxyguanosine triphosphatase -
  ETN89_RS10185 (ETN89_10185) yfbR 2119898..2120482 (-) 585 WP_068947009.1 5'-deoxynucleotidase -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10506.22 Da        Isoelectric Point: 6.3453

>NTDB_id=342602 ETN89_RS10155 WP_086367256.1 2116283..2116570(+) (comEA) [Photobacterium damselae subsp. damselae strain KC-Na-NB1]
MKQGFVTVVMTLAMLLTPLAYAAKDKYEDIEIVVNINKANAEELDKLLVGIGPDKAENIIQYRKQNGKFATADDLAKVKG
IGPSTVEKNRDRIEL

Nucleotide


Download         Length: 288 bp        

>NTDB_id=342602 ETN89_RS10155 WP_086367256.1 2116283..2116570(+) (comEA) [Photobacterium damselae subsp. damselae strain KC-Na-NB1]
ATGAAACAAGGATTTGTTACTGTAGTAATGACATTAGCAATGCTACTTACCCCGTTAGCTTATGCAGCGAAAGATAAGTA
CGAAGATATTGAAATTGTTGTCAATATTAATAAAGCAAATGCAGAAGAGTTAGATAAGTTACTGGTTGGAATCGGCCCAG
ATAAGGCTGAAAATATTATTCAATATCGTAAGCAGAATGGTAAATTTGCGACCGCAGATGATCTTGCTAAGGTAAAAGGC
ATTGGCCCCTCAACCGTAGAAAAAAACCGCGATCGCATTGAACTGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(33-93)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio campbellii strain DS40M4

53.261

96.842

0.516
  comEA Vibrio parahaemolyticus RIMD 2210633

52.747

95.789

0.505
  comEA Vibrio cholerae C6706

45.545

100

0.484
  comEA Vibrio cholerae strain A1552

45.545

100

0.484
  comEA Acinetobacter baylyi ADP1

57.812

67.368

0.389

Multiple sequence alignment