Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NT01EI_RS00305 Genome accession   NC_012779
Coordinates   67220..68740 (-) Length   506 a.a.
NCBI ID   WP_015869556.1    Uniprot ID   C5BBA0
Organism   Edwardsiella ictaluri 93-146     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 62220..73740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NT01EI_RS00285 (NT01EI_0071) rfaF 62626..63687 (-) 1062 WP_015869552.1 ADP-heptose--LPS heptosyltransferase RfaF -
  NT01EI_RS00290 (NT01EI_0072) rfaD 63711..64640 (-) 930 WP_015869553.1 ADP-glyceromanno-heptose 6-epimerase -
  NT01EI_RS00295 (NT01EI_0073) - 64931..66127 (+) 1197 WP_015869554.1 glycine C-acetyltransferase -
  NT01EI_RS00300 (NT01EI_0074) tdh 66137..67162 (+) 1026 WP_015869555.1 L-threonine 3-dehydrogenase -
  NT01EI_RS00305 (NT01EI_0075) comM 67220..68740 (-) 1521 WP_015869556.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NT01EI_RS00310 (NT01EI_0076) - 69028..70263 (+) 1236 WP_015869557.1 MFS transporter -
  NT01EI_RS17520 ilvL 70391..70489 (+) 99 WP_071525675.1 ilv operon leader peptide -
  NT01EI_RS00315 (NT01EI_0077) ilvG 70627..72276 (+) 1650 WP_015869558.1 acetolactate synthase 2 catalytic subunit -
  NT01EI_RS00320 (NT01EI_0078) ilvM 72273..72563 (+) 291 WP_015869559.1 acetolactate synthase 2 small subunit -
  NT01EI_RS00325 (NT01EI_0079) - 72617..73546 (+) 930 WP_015869560.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53699.03 Da        Isoelectric Point: 9.1965

>NTDB_id=34237 NT01EI_RS00305 WP_015869556.1 67220..68740(-) (comM) [Edwardsiella ictaluri 93-146]
MTLATVYTRAALGIQAPEVRIEAHIGNGLPGFTLVGLPETAVREAKDRVRCAMLNSGFQFPPKRITLNLAPADLPKEGGR
YDLPMALALLLASGQLAPHVSVCNYEFIGELALSGDLRPVQGALPAALSAAHAKRTLIAPSDNAAELGLLAAPRPPIAPS
LLAVCAFLSGQASLEAAPAGEMTSGGTDTGDMADIIGQAQARRALEIAAAGGHNLLLIGPPGTGKTMLACRLPGLLPPMT
PDEALEQAAISSLAYPGTMPPRYGVRPFRAPHHSASMAALIGGGPLPKPGEISLAHHGVLFLDELAEFDRRTLDALREPL
ESGVVHLSRARIKVSFPARVQLVAAMNPSSGGHADGRDRRAAAAQVLRYLSRLSGPLLDRFDLSIDVPPLSPGLLARQRA
DGEDSATLRRRVCAARVRQYARGGRLNAHLEGAARDRDCRLAPDDALYLEQALTRLALSVRAWHRLLKVARTLADLEGCD
NIARRHLAEALSYRAMDRLLLTLQRG

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=34237 NT01EI_RS00305 WP_015869556.1 67220..68740(-) (comM) [Edwardsiella ictaluri 93-146]
ATGACTCTGGCCACTGTATACACGCGCGCCGCCCTGGGTATTCAAGCCCCCGAGGTCCGCATTGAGGCGCATATCGGCAA
CGGCCTGCCGGGCTTTACCCTGGTGGGTCTACCGGAAACGGCCGTACGCGAAGCCAAAGATCGGGTACGCTGTGCCATGT
TGAACAGCGGATTTCAGTTCCCGCCGAAGCGCATTACGTTGAACCTGGCACCCGCCGATCTGCCCAAAGAAGGGGGGCGT
TACGATCTGCCGATGGCGCTGGCGTTGCTGCTGGCGTCCGGGCAGCTGGCCCCGCACGTATCCGTTTGCAACTACGAGTT
TATTGGAGAGTTGGCCCTGTCCGGCGATCTGCGCCCGGTCCAGGGGGCGCTACCCGCCGCGCTGAGCGCCGCCCACGCGA
AGCGTACCCTGATAGCGCCCAGTGATAACGCGGCCGAGCTTGGGCTGCTGGCGGCCCCACGGCCCCCCATCGCGCCATCG
CTGCTGGCCGTCTGCGCCTTTCTGAGCGGCCAGGCATCCCTGGAGGCCGCGCCGGCCGGCGAGATGACGAGCGGCGGTAC
AGACACCGGCGATATGGCCGACATTATCGGCCAGGCACAGGCACGACGGGCGCTGGAGATCGCCGCCGCCGGCGGACATA
ACCTGCTGCTGATCGGTCCTCCGGGCACCGGTAAAACCATGCTGGCCTGCCGCCTGCCAGGGCTGCTGCCGCCGATGACC
CCGGATGAGGCACTGGAGCAGGCGGCCATCAGCAGTCTGGCCTACCCGGGCACCATGCCGCCGCGCTATGGCGTGCGCCC
CTTTCGCGCACCACATCACAGCGCCTCCATGGCCGCGTTGATCGGCGGGGGGCCGCTGCCGAAACCCGGCGAGATCTCGC
TGGCCCATCACGGTGTCCTGTTTCTTGACGAACTGGCCGAATTTGACCGGCGAACCCTGGACGCCTTGCGCGAACCGCTG
GAGTCCGGCGTCGTCCATCTGTCCCGCGCCAGGATAAAGGTCAGCTTTCCCGCCCGGGTACAGCTGGTGGCGGCCATGAA
TCCCAGCAGCGGTGGCCACGCTGACGGGCGCGATCGCCGGGCGGCGGCGGCGCAGGTGCTAAGATACCTCTCCCGGCTGT
CCGGCCCCCTGCTTGACCGCTTCGATCTGTCGATTGATGTTCCGCCGCTGTCACCGGGCCTGCTGGCCCGCCAACGGGCG
GATGGCGAAGACAGTGCGACCCTACGCCGGCGGGTCTGCGCCGCCCGGGTGCGGCAGTATGCCCGTGGCGGCCGGCTCAA
TGCGCATCTGGAGGGCGCCGCCCGCGATCGCGACTGCCGTCTGGCTCCGGACGATGCCCTCTATCTGGAGCAGGCGCTCA
CGCGCCTGGCACTATCGGTACGCGCCTGGCACCGGCTGCTGAAAGTGGCGCGTACGCTGGCGGATCTGGAAGGATGCGAT
AACATTGCACGCCGCCATCTGGCCGAGGCGCTGAGCTACCGCGCCATGGATCGGCTACTGCTCACCCTGCAAAGGGGCTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C5BBA0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

58.052

99.407

0.577
  comM Haemophilus influenzae Rd KW20

57.087

100

0.573
  comM Vibrio campbellii strain DS40M4

56.859

99.407

0.565
  comM Glaesserella parasuis strain SC1401

55.186

100

0.557
  comM Legionella pneumophila str. Paris

46.693

98.617

0.46
  comM Legionella pneumophila strain ERS1305867

46.693

98.617

0.46
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.11

100

0.433

Multiple sequence alignment