Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYF   Type   Machinery gene
Locus tag   ETT49_RS00685 Genome accession   NZ_CP035450
Coordinates   104818..105252 (+) Length   144 a.a.
NCBI ID   WP_020833199.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm93.4     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 99818..110252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT49_RS00655 (ETT49_00655) - 101487..101852 (+) 366 WP_002986560.1 DUF1033 family protein -
  ETT49_RS00660 (ETT49_00660) comYA 101945..102883 (+) 939 WP_002993471.1 competence type IV pilus ATPase ComGA Machinery gene
  ETT49_RS00665 (ETT49_00665) comYB 102819..103853 (+) 1035 WP_225793059.1 competence type IV pilus assembly protein ComGB Machinery gene
  ETT49_RS00670 (ETT49_00670) comYC 103855..104181 (+) 327 WP_002986552.1 competence type IV pilus major pilin ComGC Machinery gene
  ETT49_RS00675 (ETT49_00675) comGD 104156..104584 (+) 429 WP_002986548.1 competence type IV pilus minor pilin ComGD -
  ETT49_RS00680 (ETT49_00680) comGE 104541..104825 (+) 285 WP_265415267.1 competence type IV pilus minor pilin ComGE -
  ETT49_RS00685 (ETT49_00685) comYF 104818..105252 (+) 435 WP_020833199.1 competence type IV pilus minor pilin ComGF Machinery gene
  ETT49_RS00690 (ETT49_00690) comGG 105236..105562 (+) 327 WP_010921801.1 competence type IV pilus minor pilin ComGG -
  ETT49_RS00695 (ETT49_00695) comYH 105660..106613 (+) 954 WP_136269477.1 class I SAM-dependent methyltransferase Machinery gene
  ETT49_RS00700 (ETT49_00700) - 106672..107868 (+) 1197 WP_002986533.1 acetate kinase -
  ETT49_RS00705 (ETT49_00705) - 108055..108363 (+) 309 WP_011017251.1 hypothetical protein -
  ETT49_RS00710 (ETT49_00710) proC 108446..109216 (-) 771 WP_002986527.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16670.28 Da        Isoelectric Point: 10.2526

>NTDB_id=342221 ETT49_RS00685 WP_020833199.1 104818..105252(+) (comYF) [Streptococcus pyogenes strain emm93.4]
MSKQLSNIKAFTLLDALIALLVISGSLLVYQGLTRTLLKHSHYLARHDQDNWLLFSHQLREELSGARFYKVTDNKLYVEK
GKKVLAFGQFKSHDFRKSASNGKGYQPMLFGISRSHIHIEQSQICITLKWKSGLERTFYYAFQD

Nucleotide


Download         Length: 435 bp        

>NTDB_id=342221 ETT49_RS00685 WP_020833199.1 104818..105252(+) (comYF) [Streptococcus pyogenes strain emm93.4]
TTGAGTAAACAATTAAGTAACATAAAAGCTTTTACCCTTCTAGATGCGTTAATAGCCTTACTCGTGATATCAGGGTCTTT
ATTGGTTTATCAAGGTTTGACCCGAACCCTCCTTAAACATAGCCATTATCTAGCCCGTCATGATCAAGATAATTGGCTCT
TATTTTCTCATCAATTGCGAGAGGAGTTAAGTGGAGCAAGATTTTACAAAGTAACTGATAATAAACTATACGTTGAAAAA
GGAAAGAAAGTACTAGCTTTTGGCCAATTTAAAAGTCATGATTTTCGAAAATCAGCTAGTAATGGAAAAGGGTATCAACC
CATGTTATTTGGAATATCACGTAGTCATATTCACATAGAGCAGTCACAGATTTGCATTACTTTAAAGTGGAAAAGTGGGT
TAGAAAGGACTTTTTATTATGCCTTTCAAGACTAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(41-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYF Streptococcus mutans UA140

50.36

96.528

0.486
  comYF Streptococcus mutans UA159

49.64

96.528

0.479
  comGF Lactococcus lactis subsp. cremoris KW2

46.715

95.139

0.444
  comGF/cglF Streptococcus mitis NCTC 12261

43.284

93.056

0.403
  comGF/cglF Streptococcus pneumoniae Rx1

42.105

92.361

0.389
  comGF/cglF Streptococcus pneumoniae D39

42.105

92.361

0.389
  comGF/cglF Streptococcus pneumoniae R6

42.105

92.361

0.389
  comGF/cglF Streptococcus pneumoniae TIGR4

42.105

92.361

0.389
  comGF/cglF Streptococcus mitis SK321

41.353

92.361

0.382

Multiple sequence alignment