Detailed information
Bioinformatically predicted
Overview
| Name | rapC | Type | Regulator |
| Locus tag | BACIH_RS02050 | Genome accession | NZ_CP044360 |
| Coordinates | 408629..409762 (+) | Length | 377 a.a. |
| NCBI ID | WP_012116843.1 | Uniprot ID | - |
| Organism | Bacillus amyloliquefaciens strain V167 | ||
| Function | inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation |
||
Genomic Context
Location: 403629..414762
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BACIH_RS02015 (BACIH_0400) | - | 404218..404664 (+) | 447 | WP_012116838.1 | NUDIX hydrolase | - |
| BACIH_RS02020 (BACIH_0401) | - | 404722..406443 (+) | 1722 | WP_012116839.1 | pyruvate oxidase | - |
| BACIH_RS02025 | - | 406559..406995 (-) | 437 | Protein_389 | GNAT family N-acetyltransferase | - |
| BACIH_RS19690 | - | 407104..407225 (+) | 122 | Protein_390 | peptidoglycan-binding protein | - |
| BACIH_RS02035 (BACIH_0404) | - | 407432..407644 (-) | 213 | WP_012116841.1 | spore germination protein | - |
| BACIH_RS19695 | - | 408026..408211 (+) | 186 | WP_225367686.1 | hypothetical protein | - |
| BACIH_RS02045 | - | 408289..408492 (+) | 204 | WP_077411029.1 | DUF2651 family protein | - |
| BACIH_RS02050 (BACIH_0406) | rapC | 408629..409762 (+) | 1134 | WP_012116843.1 | Rap family tetratricopeptide repeat protein | Regulator |
| BACIH_RS19865 | - | 409759..409893 (+) | 135 | WP_007609509.1 | hypothetical protein | - |
| BACIH_RS19700 (BACIH_0407) | - | 410244..410474 (-) | 231 | WP_012116845.1 | hypothetical protein | - |
| BACIH_RS19925 (BACIH_0408) | - | 410648..410842 (-) | 195 | WP_150978864.1 | hypothetical protein | - |
| BACIH_RS02065 | - | 410856..411413 (-) | 558 | WP_012116846.1 | hypothetical protein | - |
| BACIH_RS19525 | - | 411510..412088 (-) | 579 | WP_012116847.1 | hypothetical protein | - |
| BACIH_RS02075 (BACIH_0411) | - | 412314..412580 (-) | 267 | WP_012116848.1 | hypothetical protein | - |
| BACIH_RS02080 (BACIH_0412) | - | 412685..413962 (-) | 1278 | WP_123912783.1 | Nramp family divalent metal transporter | - |
Sequence
Protein
Download Length: 377 a.a. Molecular weight: 44756.16 Da Isoelectric Point: 5.3016
>NTDB_id=342222 BACIH_RS02050 WP_012116843.1 408629..409762(+) (rapC) [Bacillus amyloliquefaciens strain V167]
MDQVLPSSQVGVKINEWYKMIRQFSVPDAEILKAEVEQEIEEMEEDQDLLVFYSLMCFRHQLMLDSLEPEDRYRDRPTVD
ELLEKIEKPQKRLTGLLKYYSLFFRGMYEFDHKEYVEAIGYYRKAERELSAVSDEMEQAEFHYKIADAYYQIDQHFVSLN
HLKKAKQLFEKSQLYKVKVIGCNMMVGANMYDMYRLTEAESYYREALSIARGLEEEKVKRIIGVIFHNLGLVYLRGKNLI
AAEENFKKAIDVKEHIDTVYGVRSLYMMANVLYQCDKAKEARFFYETALNRARTSNEEEYLAKLKIINSLYEEYNETEVK
QSLGYLEEKRLWSDFAELTEKLGDFHFEKRNYAEGRNFLKKTIHAQTQILKVTEAIS
MDQVLPSSQVGVKINEWYKMIRQFSVPDAEILKAEVEQEIEEMEEDQDLLVFYSLMCFRHQLMLDSLEPEDRYRDRPTVD
ELLEKIEKPQKRLTGLLKYYSLFFRGMYEFDHKEYVEAIGYYRKAERELSAVSDEMEQAEFHYKIADAYYQIDQHFVSLN
HLKKAKQLFEKSQLYKVKVIGCNMMVGANMYDMYRLTEAESYYREALSIARGLEEEKVKRIIGVIFHNLGLVYLRGKNLI
AAEENFKKAIDVKEHIDTVYGVRSLYMMANVLYQCDKAKEARFFYETALNRARTSNEEEYLAKLKIINSLYEEYNETEVK
QSLGYLEEKRLWSDFAELTEKLGDFHFEKRNYAEGRNFLKKTIHAQTQILKVTEAIS
Nucleotide
Download Length: 1134 bp
>NTDB_id=342222 BACIH_RS02050 WP_012116843.1 408629..409762(+) (rapC) [Bacillus amyloliquefaciens strain V167]
GTGGACCAAGTTTTACCGTCGTCCCAAGTTGGTGTCAAGATCAATGAATGGTACAAAATGATTCGCCAGTTCAGTGTGCC
TGATGCTGAGATTTTAAAGGCTGAAGTAGAACAGGAAATAGAGGAGATGGAAGAGGATCAGGATTTGCTTGTTTTTTATT
CATTGATGTGCTTTCGTCACCAATTGATGTTAGATTCCTTGGAGCCGGAAGACAGATATCGAGATCGCCCCACAGTCGAC
GAACTACTTGAAAAAATAGAAAAGCCGCAAAAAAGACTTACAGGCCTCTTGAAGTATTACTCATTATTTTTTCGTGGAAT
GTATGAATTTGATCATAAAGAGTATGTTGAAGCGATAGGCTATTATCGCAAAGCAGAGAGAGAGTTGAGTGCTGTATCAG
ATGAAATGGAGCAAGCTGAATTTCATTACAAAATAGCTGATGCCTATTATCAAATTGATCAGCACTTTGTTTCCCTCAAT
CATTTAAAAAAAGCCAAGCAATTGTTTGAAAAAAGTCAATTATACAAAGTGAAAGTGATTGGCTGTAATATGATGGTCGG
TGCTAACATGTACGATATGTACAGGCTGACGGAGGCAGAATCATATTATCGGGAAGCATTAAGTATCGCCCGTGGGTTGG
AAGAGGAAAAAGTGAAAAGAATTATCGGAGTGATTTTTCATAACTTAGGTTTAGTTTATTTAAGAGGGAAAAATTTAATT
GCTGCTGAAGAGAATTTCAAAAAGGCAATAGACGTGAAAGAACATATTGATACAGTGTATGGTGTGAGATCATTATATAT
GATGGCAAATGTCCTGTACCAATGTGATAAAGCAAAGGAAGCGCGTTTCTTTTATGAAACGGCTTTAAATCGTGCTCGGA
CTTCTAATGAAGAGGAATATTTGGCTAAATTAAAAATCATTAATTCATTGTACGAAGAATATAATGAAACAGAAGTGAAA
CAAAGCTTAGGTTACTTGGAAGAGAAACGCCTTTGGTCTGATTTCGCAGAGCTAACCGAAAAATTAGGTGACTTTCATTT
TGAAAAGAGAAACTATGCAGAGGGAAGAAACTTTTTAAAGAAAACCATACATGCCCAAACACAAATACTTAAGGTTACGG
AGGCTATATCATGA
GTGGACCAAGTTTTACCGTCGTCCCAAGTTGGTGTCAAGATCAATGAATGGTACAAAATGATTCGCCAGTTCAGTGTGCC
TGATGCTGAGATTTTAAAGGCTGAAGTAGAACAGGAAATAGAGGAGATGGAAGAGGATCAGGATTTGCTTGTTTTTTATT
CATTGATGTGCTTTCGTCACCAATTGATGTTAGATTCCTTGGAGCCGGAAGACAGATATCGAGATCGCCCCACAGTCGAC
GAACTACTTGAAAAAATAGAAAAGCCGCAAAAAAGACTTACAGGCCTCTTGAAGTATTACTCATTATTTTTTCGTGGAAT
GTATGAATTTGATCATAAAGAGTATGTTGAAGCGATAGGCTATTATCGCAAAGCAGAGAGAGAGTTGAGTGCTGTATCAG
ATGAAATGGAGCAAGCTGAATTTCATTACAAAATAGCTGATGCCTATTATCAAATTGATCAGCACTTTGTTTCCCTCAAT
CATTTAAAAAAAGCCAAGCAATTGTTTGAAAAAAGTCAATTATACAAAGTGAAAGTGATTGGCTGTAATATGATGGTCGG
TGCTAACATGTACGATATGTACAGGCTGACGGAGGCAGAATCATATTATCGGGAAGCATTAAGTATCGCCCGTGGGTTGG
AAGAGGAAAAAGTGAAAAGAATTATCGGAGTGATTTTTCATAACTTAGGTTTAGTTTATTTAAGAGGGAAAAATTTAATT
GCTGCTGAAGAGAATTTCAAAAAGGCAATAGACGTGAAAGAACATATTGATACAGTGTATGGTGTGAGATCATTATATAT
GATGGCAAATGTCCTGTACCAATGTGATAAAGCAAAGGAAGCGCGTTTCTTTTATGAAACGGCTTTAAATCGTGCTCGGA
CTTCTAATGAAGAGGAATATTTGGCTAAATTAAAAATCATTAATTCATTGTACGAAGAATATAATGAAACAGAAGTGAAA
CAAAGCTTAGGTTACTTGGAAGAGAAACGCCTTTGGTCTGATTTCGCAGAGCTAACCGAAAAATTAGGTGACTTTCATTT
TGAAAAGAGAAACTATGCAGAGGGAAGAAACTTTTTAAAGAAAACCATACATGCCCAAACACAAATACTTAAGGTTACGG
AGGCTATATCATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rapC | Bacillus subtilis subsp. subtilis str. 168 |
37.802 |
98.939 |
0.374 |