Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   F7G16_RS03245 Genome accession   NZ_CP044352
Coordinates   753220..754611 (-) Length   463 a.a.
NCBI ID   WP_004090670.1    Uniprot ID   -
Organism   Xylella fastidiosa strain ATCC 35879     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 748220..759611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7G16_RS03225 (F7G16_03395) truA 748903..749673 (+) 771 WP_004090661.1 tRNA pseudouridine(38-40) synthase TruA -
  F7G16_RS03230 (F7G16_03400) - 749670..750332 (+) 663 WP_004090663.1 phosphoribosylanthranilate isomerase -
  F7G16_RS03235 (F7G16_03405) trpB 750834..752051 (+) 1218 WP_011097720.1 tryptophan synthase subunit beta -
  F7G16_RS03240 (F7G16_03410) trpA 752177..752983 (+) 807 WP_004090667.1 tryptophan synthase subunit alpha -
  F7G16_RS03245 (F7G16_03415) radA/sms 753220..754611 (-) 1392 WP_004090670.1 DNA repair protein RadA Machinery gene
  F7G16_RS03250 (F7G16_03420) - 754808..755773 (+) 966 WP_004090672.1 LLM class flavin-dependent oxidoreductase -
  F7G16_RS03255 (F7G16_03425) - 755976..756455 (-) 480 WP_004090673.1 hypothetical protein -
  F7G16_RS03260 (F7G16_03430) recQ 756578..758380 (-) 1803 WP_004090674.1 DNA helicase RecQ Machinery gene
  F7G16_RS03265 (F7G16_03435) - 758561..759103 (-) 543 WP_004090677.1 Dps family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 49418.69 Da        Isoelectric Point: 7.9423

>NTDB_id=342156 F7G16_RS03245 WP_004090670.1 753220..754611(-) (radA/sms) [Xylella fastidiosa strain ATCC 35879]
MTKNAASKARIAYVCTECGTEYSKWQGQCTECGTWNCLSQITLGHAGSVKNPTMKHGNWTGQLDPPKITALKDVQHSEQA
RISTGIGEFDRVLGGGLVAGAVVLIGGDPGIGKSTLLLQALARMASTLPTLYVTGEESLAQVAGRAVRLDLSLEGLNALA
ETGIESILQHASSARPRLIVADSVQTLWTETLTAAPGSVSQVRESAAQLVRYAKETGTTVFLVGHVTKEGGIAGPRVLEH
MVDAVLYFEGESGSRFRLLRAFKNRFGAVNELGVFAMSEKGLKEVANPSAIFLSGRNSDQPGSCVMVTREGTRPLMVEVQ
ALVDTSPLSNPRRVTVGLEQNRLAMLLAVLHRHGNVLVGDQDVFINIVGGIRVQETAADLPVLLAVRSSLCNRALPEKTI
AFGEVGLSGEIRPVPNGEERLREAATHGFKRAIVPKANAPKSAIKDMQIIAVERLDQALEASY

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=342156 F7G16_RS03245 WP_004090670.1 753220..754611(-) (radA/sms) [Xylella fastidiosa strain ATCC 35879]
ATGACCAAAAACGCCGCAAGCAAAGCCAGGATTGCCTATGTCTGCACTGAATGCGGCACCGAATACAGCAAATGGCAGGG
ACAGTGCACCGAATGCGGCACCTGGAATTGCTTAAGCCAAATCACCCTCGGACATGCAGGATCTGTCAAAAACCCAACCA
TGAAGCACGGCAATTGGACCGGTCAGCTCGACCCACCCAAGATCACCGCATTGAAGGACGTGCAACACAGCGAACAAGCA
CGCATCTCCACCGGCATTGGCGAGTTTGACCGCGTCCTAGGAGGCGGCCTGGTGGCAGGCGCGGTAGTCCTGATTGGTGG
CGATCCAGGCATCGGCAAATCCACATTGCTACTGCAAGCACTAGCACGGATGGCAAGCACCCTACCCACACTGTATGTGA
CGGGTGAAGAATCGCTGGCACAGGTCGCCGGACGTGCGGTGCGCCTGGATCTGTCCCTGGAGGGCTTAAACGCACTCGCA
GAAACCGGTATTGAATCAATCCTGCAACACGCCAGCAGCGCACGGCCACGACTGATTGTCGCCGACTCAGTACAGACCCT
ATGGACCGAAACACTGACCGCAGCACCCGGTTCAGTCAGCCAAGTACGAGAAAGCGCCGCACAGCTAGTGCGCTACGCCA
AAGAAACCGGCACAACCGTGTTCCTGGTTGGCCATGTCACCAAAGAAGGCGGCATCGCCGGCCCACGCGTACTGGAGCAC
ATGGTAGATGCCGTGCTGTATTTTGAAGGCGAAAGCGGTAGCCGTTTCCGTCTCCTGCGGGCATTCAAAAACCGCTTTGG
AGCAGTCAACGAACTAGGCGTCTTTGCGATGAGCGAAAAAGGCTTGAAAGAGGTCGCCAATCCATCAGCCATTTTTTTAT
CCGGCAGAAACAGCGACCAACCAGGCAGCTGTGTGATGGTCACCCGTGAAGGTACACGCCCCCTGATGGTCGAAGTACAA
GCACTCGTCGATACCTCGCCACTGTCCAACCCACGCCGGGTGACCGTCGGGCTGGAACAAAATCGGCTGGCAATGCTGTT
AGCCGTGTTGCATCGTCACGGTAACGTCCTGGTTGGTGACCAAGACGTATTCATCAACATCGTTGGCGGCATCCGCGTTC
AAGAGACAGCCGCAGATCTACCTGTACTACTGGCGGTCCGGTCCTCGTTATGCAACCGGGCGCTGCCAGAAAAGACCATC
GCCTTTGGCGAAGTGGGTTTATCCGGTGAAATCCGCCCGGTCCCCAACGGCGAAGAGCGCCTCAGAGAAGCGGCAACACA
CGGCTTTAAGCGCGCCATTGTGCCAAAAGCCAACGCACCCAAGAGTGCCATCAAGGACATGCAGATCATCGCCGTAGAAC
GCCTGGATCAGGCGCTGGAAGCAAGCTATTGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(359-438)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(13-38)

KaiC (ATPase)

(82-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

45.633

98.92

0.451
  radA Streptococcus pneumoniae Rx1

42.702

99.136

0.423
  radA Streptococcus pneumoniae D39

42.702

99.136

0.423
  radA Streptococcus pneumoniae R6

42.702

99.136

0.423
  radA Streptococcus pneumoniae TIGR4

42.702

99.136

0.423
  radA Streptococcus mitis NCTC 12261

42.702

99.136

0.423
  radA Streptococcus mitis SK321

42.484

99.136

0.421

Multiple sequence alignment