Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   TOLA_RS15705 Genome accession   NC_012691
Coordinates   3349560..3351080 (-) Length   506 a.a.
NCBI ID   WP_015880097.1    Uniprot ID   C4LDN7
Organism   Tolumonas auensis DSM 9187     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3344560..3356080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TOLA_RS15685 (Tola_3055) - 3345376..3345735 (-) 360 WP_015880093.1 DMT family protein -
  TOLA_RS15690 (Tola_3056) - 3345948..3347366 (+) 1419 WP_015880094.1 alkaline phosphatase -
  TOLA_RS15695 (Tola_3057) - 3347388..3348761 (+) 1374 WP_015880095.1 alkaline phosphatase -
  TOLA_RS15700 (Tola_3058) - 3348836..3349522 (+) 687 WP_015880096.1 hypothetical protein -
  TOLA_RS15705 (Tola_3059) comM 3349560..3351080 (-) 1521 WP_015880097.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  TOLA_RS15710 (Tola_3060) - 3351285..3352181 (+) 897 WP_015880098.1 MBL fold metallo-hydrolase -
  TOLA_RS15715 (Tola_3061) - 3352265..3353227 (+) 963 WP_015880099.1 helix-turn-helix domain-containing protein -
  TOLA_RS15720 (Tola_3062) ulaR 3353349..3354104 (-) 756 WP_015880100.1 HTH-type transcriptional regulator UlaR -
  TOLA_RS15725 (Tola_3063) - 3354195..3355067 (-) 873 WP_015880101.1 L-ribulose-5-phosphate 3-epimerase -
  TOLA_RS15730 (Tola_3064) - 3355084..3355908 (-) 825 WP_015880102.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54973.09 Da        Isoelectric Point: 7.3219

>NTDB_id=34153 TOLA_RS15705 WP_015880097.1 3349560..3351080(-) (comM) [Tolumonas auensis DSM 9187]
MSLAVVYSRASLGIDAPLVSVEVHLSNGLPAFNMVGLPEASVKESRDRVRSALINGNFEFPAKRITVNLAPADLPKEGGR
FDLAIALGILAASGQIPDQLLAEYEFLGELALTGDVRSVLGVLPAVLAAGRAGRTLVVPRMNGAEASLIQQYRAYLSDSL
LQVCGWLAGEQALPVAESVAGEADLTPVADLQDVIGQQTGKRALEIAASGQHHLLFMGPPGTGKSMLASRLPGILPEMSD
EEAQQTAALHSIGGLNPGKVNWKLRPFRSPHHSASSVALVGGGSKPRPGEISLAHNGVLFMDELTEFERRTLDSLREPLE
TGHITISRAARQMEFPSRFQLIAAMNPSPCGHLDDQQRASPEQVLRYLGKLSGPFLDRFDLTVEIPLLPKGSLSQKAERG
ESSADIRARVMATRERQFARSGKLNAMLESREIERDCALLTEDAQFLENAIHKLGLSLRAWHKLLKVSRTIADIAGEPQI
QRQHLIEALGYRAMDRLFQRLKTQRF

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=34153 TOLA_RS15705 WP_015880097.1 3349560..3351080(-) (comM) [Tolumonas auensis DSM 9187]
ATGTCACTTGCCGTTGTCTATAGCCGTGCCAGTCTGGGCATTGATGCCCCTTTAGTTTCTGTCGAAGTTCATCTCAGTAA
TGGTTTACCGGCGTTTAATATGGTCGGATTGCCGGAAGCGTCGGTGAAGGAATCGCGTGATCGGGTGCGCAGCGCGCTGA
TCAACGGCAATTTCGAGTTTCCCGCCAAACGCATCACCGTCAACCTGGCGCCGGCCGATTTACCAAAGGAGGGCGGTCGG
TTCGATCTGGCGATTGCGCTGGGCATTCTGGCGGCTTCCGGGCAGATCCCGGATCAGTTACTGGCGGAGTATGAGTTTTT
AGGTGAACTGGCATTAACCGGCGATGTGCGTTCGGTGTTAGGTGTGTTGCCGGCGGTATTGGCTGCCGGACGGGCCGGGC
GCACACTGGTGGTACCGCGCATGAATGGCGCGGAAGCCAGCCTGATCCAGCAATACCGGGCATATCTGAGTGATTCCTTG
CTGCAGGTTTGTGGCTGGCTGGCCGGAGAACAGGCGTTGCCGGTAGCCGAAAGTGTGGCCGGTGAAGCGGACTTAACGCC
GGTGGCAGATCTGCAGGATGTGATTGGTCAGCAGACCGGAAAACGGGCGCTGGAGATTGCGGCCAGCGGGCAACATCATC
TGCTGTTTATGGGGCCGCCGGGTACCGGGAAAAGTATGCTGGCGAGCCGTCTGCCCGGTATTTTGCCGGAAATGAGCGAT
GAAGAGGCGCAGCAAACCGCGGCCCTGCATTCGATTGGCGGTCTTAACCCCGGCAAGGTGAACTGGAAACTCCGGCCGTT
CCGCTCACCGCATCACAGTGCTTCTTCCGTGGCGCTGGTGGGTGGCGGCAGTAAACCCCGTCCCGGCGAGATTTCGCTGG
CACATAACGGGGTGTTGTTTATGGATGAACTCACGGAGTTTGAACGCAGAACACTGGATTCCCTGCGTGAGCCACTGGAG
ACCGGACATATCACCATCTCCCGCGCCGCCCGGCAGATGGAGTTTCCGTCGCGTTTTCAGCTGATTGCCGCGATGAATCC
GAGCCCGTGCGGGCATCTGGATGACCAGCAGCGGGCCAGCCCCGAACAGGTGCTGCGTTATCTGGGCAAACTCTCCGGCC
CGTTTCTCGATCGCTTTGATTTGACGGTGGAAATCCCGCTGTTGCCGAAAGGCAGTCTGAGCCAGAAAGCGGAACGCGGC
GAAAGCAGCGCGGACATCCGGGCGCGGGTGATGGCAACCCGCGAGCGGCAGTTCGCCCGCAGCGGGAAACTGAATGCGAT
GCTGGAGAGCCGCGAGATTGAGCGGGATTGTGCTCTGCTCACCGAAGACGCGCAGTTTTTGGAAAATGCCATTCACAAGT
TAGGTTTGTCGTTGCGGGCGTGGCACAAGCTGCTGAAGGTCTCACGCACCATTGCCGATATTGCCGGCGAGCCGCAGATC
CAGCGCCAGCATCTGATCGAGGCATTGGGCTACCGGGCGATGGACCGGTTGTTTCAGCGGCTGAAAACACAGCGTTTCTG
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C4LDN7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.564

99.802

0.634
  comM Glaesserella parasuis strain SC1401

62.13

100

0.623
  comM Vibrio campbellii strain DS40M4

61.782

99.802

0.617
  comM Haemophilus influenzae Rd KW20

61.265

100

0.613
  comM Legionella pneumophila str. Paris

51.703

98.617

0.51
  comM Legionella pneumophila strain ERS1305867

51.703

98.617

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.75

100

0.443

Multiple sequence alignment