Detailed information NTG0341071

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: F4V40_RS18170
• Genome accession: NZ_CP044145
• Coordinates: 3395010..3396002 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli O157 strain AR-0428
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3390010..3401002

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F4V40_RS18145	pphB	3391372..3392028 (+)	657	WP_001141350.1	protein-serine/threonine phosphatase	-
F4V40_RS18150	-	3392069..3392305 (-)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
F4V40_RS18155	-	3392316..3393743 (-)	1428	WP_000863205.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
F4V40_RS18160	-	3393743..3394336 (-)	594	WP_000767724.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
F4V40_RS18165	-	3394483..3394890 (+)	408	WP_000175365.1	MarR family transcriptional regulator	-
F4V40_RS18170	rpoS	3395010..3396002 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
F4V40_RS18175	nlpD	3396065..3397159 (-)	1095	WP_306256364.1	murein hydrolase activator NlpD	-
F4V40_RS18180	pcm	3397344..3397970 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
F4V40_RS18185	surE	3397964..3398725 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
F4V40_RS18190	truD	3398706..3399755 (-)	1050	WP_000568934.1	tRNA pseudouridine(13) synthase TruD	-
F4V40_RS18195	ispF	3399752..3400231 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
F4V40_RS18200	ispD	3400231..3400941 (-)	711	WP_000246158.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=341071 F4V40_RS18170 WP_000081550.1 3395010..3396002(-) (rpoS) [Escherichia coli O157 strain AR-0428]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=341071 F4V40_RS18170 WP_000081550.1 3395010..3396002(-) (rpoS) [Escherichia coli O157 strain AR-0428]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGTGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACAGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715