Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   F4V42_RS16485 Genome accession   NZ_CP044140
Coordinates   3130225..3130740 (+) Length   171 a.a.
NCBI ID   WP_001130215.1    Uniprot ID   B5Z2A2
Organism   Escherichia coli O157 strain AR-0430     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3125225..3135740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V42_RS16440 csrA 3126042..3126227 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  F4V42_RS16470 yqaB 3127455..3128021 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  F4V42_RS16475 yqaA 3128018..3128446 (+) 429 WP_001287450.1 YqaA family protein -
  F4V42_RS16480 gshA 3128519..3130075 (+) 1557 WP_000611787.1 glutamate--cysteine ligase -
  F4V42_RS16485 luxS 3130225..3130740 (+) 516 WP_001130215.1 S-ribosylhomocysteine lyase Regulator
  F4V42_RS16490 emrB 3130804..3132342 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  F4V42_RS16495 emrA 3132359..3133531 (-) 1173 WP_001302673.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  F4V42_RS16500 emrR 3133658..3134188 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  F4V42_RS16505 ygaH 3134279..3134614 (-) 336 WP_000119749.1 L-valine transporter subunit YgaH -
  F4V42_RS16510 ygaZ 3134604..3135341 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19444.24 Da        Isoelectric Point: 5.0362

>NTDB_id=340933 F4V42_RS16485 WP_001130215.1 3130225..3130740(+) (luxS) [Escherichia coli O157 strain AR-0430]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADVWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=340933 F4V42_RS16485 WP_001130215.1 3130225..3130740(+) (luxS) [Escherichia coli O157 strain AR-0430]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGTCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATTCCGGAGCTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B5Z2A2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.515

100

0.725

Multiple sequence alignment