Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   FOB77_RS02215 Genome accession   NZ_CP044091
Coordinates   401435..402100 (-) Length   221 a.a.
NCBI ID   WP_150371496.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain FDAARGOS_669     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 396435..407100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB77_RS02210 (FOB77_02210) hpf 400804..401358 (-) 555 WP_000599096.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  FOB77_RS02215 (FOB77_02215) comFC/cflB 401435..402100 (-) 666 WP_150371496.1 ComF family protein Machinery gene
  FOB77_RS02220 (FOB77_02220) comFA/cflA 402100..403389 (-) 1290 WP_000432954.1 DEAD/DEAH box helicase Machinery gene
  FOB77_RS02225 (FOB77_02225) - 403445..404089 (+) 645 WP_001108144.1 YigZ family protein -
  FOB77_RS02230 (FOB77_02230) cysK 404180..405106 (+) 927 WP_000036944.1 cysteine synthase A -
  FOB77_RS02235 (FOB77_02235) - 405258..406346 (-) 1089 WP_000862123.1 glycerol dehydrogenase -
  FOB77_RS02240 (FOB77_02240) - 406414..407082 (-) 669 WP_000394891.1 fructose-6-phosphate aldolase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25713.00 Da        Isoelectric Point: 9.5426

>NTDB_id=340356 FOB77_RS02215 WP_150371496.1 401435..402100(-) (comFC/cflB) [Streptococcus agalactiae strain FDAARGOS_669]
MTCLLCHEIDLSQLTFVELMLLKPKQNVICQTCKGSFEALSREMGCQTCCKQIPQKQCQDCIYWGKKGIEVNYFSLYRYN
EAMKKYFSLFKFQGDYLLKDVFTKEIKAALKRYKGYTIVPVPLSHEGYQNRQFNQVIAFLQSANIPYKNILSKKDRGKQS
ANNKEERLKQVQQFTLKNEAELRDNLLIVDDIYTTGATIAQIRKLLEEKGIKNIKSFSLAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=340356 FOB77_RS02215 WP_150371496.1 401435..402100(-) (comFC/cflB) [Streptococcus agalactiae strain FDAARGOS_669]
ATGACTTGTTTGTTATGTCATGAAATAGATTTATCGCAATTAACTTTTGTGGAACTTATGCTTCTAAAACCAAAGCAAAA
CGTAATTTGTCAAACGTGCAAGGGTAGTTTTGAAGCACTTAGTAGGGAGATGGGTTGCCAAACATGTTGCAAGCAAATTC
CCCAAAAACAATGTCAAGATTGTATTTATTGGGGTAAAAAAGGTATAGAGGTAAATTATTTTTCCCTTTATAGATACAAT
GAAGCAATGAAAAAATATTTTTCTCTTTTTAAATTTCAAGGGGATTATTTGTTGAAAGATGTTTTTACAAAAGAAATAAA
AGCTGCTCTAAAAAGGTATAAGGGCTACACTATAGTGCCAGTTCCCTTGAGTCATGAAGGATACCAAAATAGGCAATTTA
ATCAAGTGATTGCTTTTCTACAATCGGCAAATATACCTTATAAAAATATTCTTTCTAAAAAAGATAGAGGTAAGCAATCG
GCTAATAATAAAGAAGAAAGACTCAAACAAGTTCAGCAATTTACATTAAAAAATGAGGCTGAGTTAAGGGATAACCTTTT
AATTGTTGATGATATTTATACAACAGGCGCAACAATAGCACAAATCAGGAAACTATTAGAAGAAAAAGGTATAAAAAATA
TAAAAAGTTTTTCATTAGCACGCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

42.081

100

0.421
  comFC/cflB Streptococcus pneumoniae Rx1

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae D39

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae R6

41.629

100

0.416
  comFC/cflB Streptococcus mitis SK321

40.724

100

0.407
  comFC/cflB Streptococcus mitis NCTC 12261

40.724

100

0.407