Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ETA15_RS16725 Genome accession   NZ_CP035403
Coordinates   3108750..3109394 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103581     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3103750..3114394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA15_RS16690 (ETA15_16690) mrpB 3104942..3105373 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  ETA15_RS16695 (ETA15_16695) mrpC 3105373..3105714 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  ETA15_RS16700 (ETA15_16700) mrpD 3105707..3107188 (+) 1482 WP_041052853.1 Na+/H+ antiporter subunit D -
  ETA15_RS16705 (ETA15_16705) mrpE 3107194..3107670 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  ETA15_RS16710 (ETA15_16710) mrpF 3107670..3107954 (+) 285 WP_041052851.1 Na(+)/H(+) antiporter subunit F1 -
  ETA15_RS16715 (ETA15_16715) mnhG 3107938..3108312 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  ETA15_RS16720 (ETA15_16720) yuxO 3108351..3108731 (-) 381 WP_041052848.1 hotdog fold thioesterase -
  ETA15_RS16725 (ETA15_16725) comA 3108750..3109394 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  ETA15_RS16730 (ETA15_16730) comP 3109475..3111787 (-) 2313 WP_014480703.1 sensor histidine kinase Regulator
  ETA15_RS16735 (ETA15_16735) comX 3111803..3112024 (-) 222 WP_014480704.1 competence pheromone ComX -
  ETA15_RS16740 (ETA15_16740) - 3112026..3112889 (-) 864 WP_014480705.1 polyprenyl synthetase family protein -
  ETA15_RS16745 (ETA15_16745) degQ 3113074..3113214 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  ETA15_RS22245 - 3113436..3113498 (+) 63 Protein_3225 hypothetical protein -
  ETA15_RS16750 (ETA15_16750) - 3113676..3114044 (+) 369 WP_017695529.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=340357 ETA15_RS16725 WP_003220716.1 3108750..3109394(-) (comA) [Bacillus subtilis strain SRCM103581]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=340357 ETA15_RS16725 WP_003220716.1 3108750..3109394(-) (comA) [Bacillus subtilis strain SRCM103581]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTTGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAATGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCCCGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment