Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ERL55_RS12435 Genome accession   NZ_CP035376
Coordinates   2696911..2698392 (+) Length   493 a.a.
NCBI ID   WP_129136693.1    Uniprot ID   -
Organism   Luteimonas sp. YGD11-2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2691911..2703392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ERL55_RS12415 - 2691938..2692327 (-) 390 WP_129136690.1 DUF559 domain-containing protein -
  ERL55_RS12420 sucD 2692751..2693623 (-) 873 WP_129136691.1 succinate--CoA ligase subunit alpha -
  ERL55_RS12425 sucC 2693759..2694919 (-) 1161 WP_129136692.1 ADP-forming succinate--CoA ligase subunit beta -
  ERL55_RS12430 - 2695186..2696784 (+) 1599 WP_241685765.1 HAMP domain-containing sensor histidine kinase -
  ERL55_RS12435 pilR 2696911..2698392 (+) 1482 WP_129136693.1 sigma-54 dependent transcriptional regulator Regulator
  ERL55_RS12440 - 2698462..2698746 (+) 285 WP_129136694.1 helix-turn-helix transcriptional regulator -
  ERL55_RS12445 - 2698743..2700029 (+) 1287 WP_129136695.1 HipA domain-containing protein -
  ERL55_RS12450 - 2700032..2700304 (+) 273 WP_129136696.1 hypothetical protein -
  ERL55_RS12455 pilA/pilA1 2700575..2701006 (+) 432 WP_129136697.1 pilin Machinery gene
  ERL55_RS12460 pilB 2701323..2703044 (+) 1722 WP_129136698.1 type IV-A pilus assembly ATPase PilB Machinery gene

Sequence

Protein


Download         Length: 493 a.a.        Molecular weight: 52987.47 Da        Isoelectric Point: 6.7312

>NTDB_id=339424 ERL55_RS12435 WP_129136693.1 2696911..2698392(+) (pilR) [Luteimonas sp. YGD11-2]
MDRGQATQRGSPVTTTSEQRSVLIVDDEHDIRELLVLTLGRMGLRTDTAATLTAARELLGSGSYELCLTDMRLPDGSGLE
LVSEITTRFPRTPVAVITAYGNVEAAVEALKAGAFDFVSKPVDIHMLRGLVRQALDLNTRPAPAPSDEPAGRLFGESDAM
VDLRRTVAKVARSQAPVHISGESGTGKELVARTIHGQSARAAGPFVPVNCGAIPSELMESEFFGHRKGSFTGAHADKPGL
FQTADGGTLFLDEVAELPLSMQVKLLRAIQEKTIRPVGASIEVPVDVRILSATHKDLAQLVDLGSFRHDLYYRINVIGLH
VPPLRERTGDLKLLSTGILQRLAQAMRRPTPVLAPAALAALEEYPFPGNVRELENILERALALAEGDLIQAEDLHLPRGQ
RPGMHLGAGAGRSDASPGQSPGGTQGPAPTPDPRTLSPYDTASTALPSYIEEIERAAIQQALQENRYNKTKTAAALGITF
RALRYKLKKLGID

Nucleotide


Download         Length: 1482 bp        

>NTDB_id=339424 ERL55_RS12435 WP_129136693.1 2696911..2698392(+) (pilR) [Luteimonas sp. YGD11-2]
ATGGATCGCGGCCAGGCAACCCAACGAGGATCCCCGGTGACCACGACCAGCGAACAACGCTCCGTACTGATCGTCGACGA
CGAGCACGACATCCGCGAGCTGCTGGTGCTGACGCTGGGGCGGATGGGCCTGCGCACCGACACCGCAGCCACCCTCACCG
CCGCGCGCGAGCTGCTGGGCAGCGGCAGCTACGAGCTGTGCCTGACCGACATGCGCCTGCCCGACGGCTCCGGCCTGGAA
CTGGTGTCGGAGATCACCACCCGCTTCCCGCGCACGCCGGTCGCGGTGATCACCGCCTACGGCAACGTCGAGGCGGCGGT
GGAAGCGTTGAAGGCCGGCGCATTCGACTTCGTCAGCAAGCCGGTCGACATCCACATGCTGCGCGGGCTGGTGCGGCAGG
CGCTCGACCTCAACACCCGCCCGGCCCCGGCGCCCAGCGACGAGCCCGCCGGGCGCCTGTTCGGTGAATCCGACGCCATG
GTCGACCTGCGCCGCACGGTGGCCAAGGTGGCGCGCAGCCAGGCGCCGGTGCACATCAGCGGCGAGTCCGGCACCGGCAA
GGAGCTGGTGGCACGCACCATCCACGGCCAGAGCGCACGGGCGGCTGGCCCGTTTGTGCCGGTCAACTGTGGCGCCATCC
CCAGCGAGCTGATGGAAAGCGAGTTCTTCGGCCACCGCAAGGGCAGCTTCACCGGCGCCCACGCCGACAAGCCCGGCCTG
TTCCAGACCGCCGACGGCGGCACGCTGTTCCTGGACGAGGTGGCCGAGCTGCCACTGTCGATGCAGGTCAAGCTGCTGCG
CGCGATCCAGGAAAAGACCATCCGCCCCGTGGGCGCCTCGATCGAGGTGCCGGTGGACGTGCGCATCCTCTCGGCCACCC
ACAAGGACCTCGCCCAGCTGGTGGACCTCGGCAGCTTCCGCCACGACCTCTACTACCGCATCAACGTCATCGGCCTGCAC
GTGCCCCCGCTGCGCGAGCGCACCGGCGACCTCAAGCTGCTGTCCACGGGCATCCTGCAGCGCCTGGCCCAGGCCATGCG
CCGCCCCACCCCGGTACTGGCCCCGGCCGCACTGGCCGCGCTCGAGGAATACCCCTTCCCCGGCAACGTGCGCGAGCTGG
AGAACATCCTCGAACGCGCGCTGGCGCTGGCCGAAGGCGACCTCATCCAGGCCGAGGACCTGCACCTGCCGCGCGGCCAG
CGCCCGGGAATGCACCTGGGTGCAGGCGCCGGCCGCAGTGATGCATCACCCGGCCAGTCGCCCGGCGGCACGCAAGGCCC
CGCGCCCACGCCCGACCCCCGCACCCTCAGCCCCTACGACACCGCCTCCACCGCCCTGCCCTCGTACATCGAGGAAATCG
AACGCGCCGCCATCCAGCAGGCCCTGCAGGAAAACCGCTACAACAAGACCAAGACCGCGGCGGCGCTGGGCATCACCTTC
CGGGCGCTGCGGTACAAGTTGAAGAAGCTGGGGATCGATTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(450-490)

Response regulator receiver domain (Response_reg)

(22-129)

Sigma-54 interaction domain (Sigma54_activat)

(154-319)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

58.824

96.552

0.568
  pilR Acinetobacter baumannii strain A118

49.061

97.16

0.477

Multiple sequence alignment